View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2500_low_5 (Length: 333)

Name: NF2500_low_5
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2500_low_5
NF2500_low_5
[»] chr6 (6 HSPs)
chr6 (59-315)||(12897056-12897312)
chr6 (114-315)||(12955334-12955547)
chr6 (114-314)||(12929810-12930022)
chr6 (170-315)||(12955680-12955825)
chr6 (167-314)||(12904783-12904932)
chr6 (128-250)||(12946208-12946341)
[»] chr2 (1 HSPs)
chr2 (103-315)||(17925868-17926091)
[»] chr5 (5 HSPs)
chr5 (187-314)||(10562647-10562773)
chr5 (215-280)||(10757626-10757690)
chr5 (216-280)||(10719398-10719461)
chr5 (188-280)||(10743199-10743296)
chr5 (215-280)||(10765621-10765685)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 59 - 315
Target Start/End: Original strand, 12897056 - 12897312
Alignment:
Q  59 ggtagataaaaaattgtgccgtccttctttgactgttcgttcaattgacttgactttgaaagatattttctttaatttgctcttgccacaccagtattta 158  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12897056 ggtagataaaaaattgtgccgtccttctttgtctgttcgttcaattgacttgactttgaaagatattttctttaatttgctcttgccacaccagtattta 12897155  T
Q  159 aatgcattttcccacataataattatagaacacaaacaaaattaaatagcataaaccactttcttctaaaccaaaatgcattctttttctttgttgtcac 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  12897156 aatgcattttcccacataataattatagaacacaaacaaaattaaatagcataaaccactttcttctaaaccaaaatgaagtctttttctttgttgtcac 12897255  T
Q  259 ctccacttttataccatcatctccnnnnnnngcttaccttaaatttaatgtggtttg 315  Q
    || |||||||||||| ||||| ||       ||||||||||||||||||||||||||    
T  12897256 ctacacttttataccttcatcccctttttatgcttaccttaaatttaatgtggtttg 12897312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 315
Target Start/End: Original strand, 12955334 - 12955547
Alignment:
Q  114 ttgaaagatattttctttaatttgctcttgc-cacaccagtatttaaatgcattttccc-----------acataataattatagaacacaaacaaaatt 201  Q
    |||||||||| |||||||||||||||||  | ||||||||||||||||||||| |||||           |||| |||| ||| |||||||||||||| |    
T  12955334 ttgaaagataatttctttaatttgctctcccacacaccagtatttaaatgcatgttccctctctatacccacatcataactatcgaacacaaacaaaact 12955433  T
Q  202 aaatagcataaaccactttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatctccnnnnnnngcttaccttaaa 301  Q
    ||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||| ||||||||       ||||||||||||    
T  12955434 aaatagcataaaccattttcttctaaaccaaaatgaagtatttttctttgttgtcacctccacttttataccttcatctcctttttttgcttaccttaaa 12955533  T
Q  302 tttaatgtggtttg 315  Q
    ||||||||||||||    
T  12955534 tttaatgtggtttg 12955547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 114 - 314
Target Start/End: Original strand, 12929810 - 12930022
Alignment:
Q  114 ttgaaagatattttctttaatttgctcttgc-cacaccagtatttaaatgcattttccc-----------acataataattatagaacacaaacaaaatt 201  Q
    ||||||||||||| ||||||||||||||  | ||||||||||||||||||||| |||||           |||| |||| ||| |||||||||||||| |    
T  12929810 ttgaaagatatttactttaatttgctctcccacacaccagtatttaaatgcatgttccctctctatacccacatcataactatcgaacacaaacaaaact 12929909  T
Q  202 aaatagcataaaccactttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatctccnnnnnnngcttaccttaaa 301  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||       | ||||||||||    
T  12929910 aaatagcataaaccactttcttctaaaccaaaatgaagtctttttctttgttgtcacctacacttttataccttcatctcctttttatgattaccttaaa 12930009  T
Q  302 tttaatgtggttt 314  Q
    |||||||||||||    
T  12930010 tttaatgtggttt 12930022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 12955680 - 12955825
Alignment:
Q  170 ccacataataattatagaacacaaacaaaattaaatagcataaaccactttcttctaaaccaaaatgcattctttttctttgttgtcacctccactttta 269  Q
    |||||| |||| ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  12955680 ccacatcataactatcgaacacaaacaaaactaaatagcataaaccattttcttctaaaccaaaatgaagtatttttctttgttgtcacctccactttta 12955779  T
Q  270 taccatcatctccnnnnnnngcttaccttaaatttaatgtggtttg 315  Q
    |||| ||||||||       ||||||||||||||||||||||||||    
T  12955780 taccttcatctcctttttttgcttaccttaaatttaatgtggtttg 12955825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 314
Target Start/End: Original strand, 12904783 - 12904932
Alignment:
Q  167 ttcccacataataattatagaacacaaacaaaattaaatagcataaaccacttt--cttctaaaccaaaatgcattctttttctttgttgtcacctccac 264  Q
    ||||||||| |||| ||| ||||||||||||||  |||||||||||||||||||  |||||||||||||||| |  ||||||||||||||||||||||||    
T  12904783 ttcccacatcataactatcgaacacaaacaaaacgaaatagcataaaccactttttcttctaaaccaaaatgaagcctttttctttgttgtcacctccac 12904882  T
Q  265 ttttataccatcatctccnnnnnnngcttaccttaaatttaatgtggttt 314  Q
    ||||||||| ||||||||       ||||||||| |||||||||||||||    
T  12904883 ttttataccttcatctcctttttctgcttaccttcaatttaatgtggttt 12904932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 12946208 - 12946341
Alignment:
Q  128 ctttaatttgctcttgccacaccagtatttaaatgcattttccc-----------acataataattatagaacacaaacaaaattaaatagcataaacca 216  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||           |||| |||| ||| |||||||||||||| ||||||||||||||||    
T  12946208 ctttaatttgctcttcccacaccagtatttaaaagcatgttccctctctatatccacatcataactatcgaacacaaacaaaactaaatagcataaacca 12946307  T
Q  217 ctttcttctaaaccaaaatgcattctttttcttt 250  Q
    |||||||||||||||||||| | |||||||||||    
T  12946308 ctttcttctaaaccaaaatgaagtctttttcttt 12946341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 103 - 315
Target Start/End: Complemental strand, 17926091 - 17925868
Alignment:
Q  103 ttgacttg-actttgaaagatattttctttaatttgctcttgccacaccagtatttaaatgcattttcc-----------cacataataattatagaaca 190  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||           |||||||||| |||||||||    
T  17926091 ttgacttgcactttgaaagatattttctttaattttctcttcccacaccaatatttaaatgcatgttccttctctattcccacataataactatagaaca 17925992  T
Q  191 caaacaaaattaaatagcataaaccactttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatctccnnnnnnng 290  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||       |    
T  17925991 caaacaaaactaaata-cataaaccactttctgctaaaccaaaatgaagtctttttctttgttgtcacctccacttttataccttcatctcctttttttg 17925893  T
Q  291 cttaccttaaatttaatgtggtttg 315  Q
    |||||||| ||||||||||||||||    
T  17925892 cttaccttcaatttaatgtggtttg 17925868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 10562647 - 10562773
Alignment:
Q  187 aacacaaacaaaattaaatagcataaaccactttcttctaaaccaaaatgcat-tctttttctttgttgtcacctccacttttataccatcatctccnnn 285  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| |  || |||||||||| ||||||| ||  ||||||||||| |||||| |       
T  10562647 aacacaaacaaaactaaacagcataaaccactttcttctaaaccaaatt--atgtctttttcttcgttgtcatctatacttttataccttcatcttcttt 10562744  T
Q  286 nnnngcttaccttaaatttaatgtggttt 314  Q
          |||||||||||||||||||||||    
T  10562745 ttctttttaccttaaatttaatgtggttt 10562773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 10757690 - 10757626
Alignment:
Q  215 cactttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatct 280  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||| ||||||    
T  10757690 cactttcttctaaaccaaa-tgaagtctttttctttgttgtcacctacacttttataccttcatct 10757626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 10719461 - 10719398
Alignment:
Q  216 actttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatct 280  Q
    |||||||||||||||||| || | |||||||||||||||||| || |||||||||||| ||||||    
T  10719461 actttcttctaaaccaaa-tgaagtctttttctttgttgtcatctacacttttataccttcatct 10719398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 10743296 - 10743199
Alignment:
Q  188 acacaaacaaaattaaatagcataaaccac------tttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatct 280  Q
    |||||||||||| |||||||||||||||||      |||||| ||||||||| || | |||||||||||| ||||| || |||||||||||| ||||||    
T  10743296 acacaaacaaaactaaatagcataaaccacacacactttcttgtaaaccaaa-tgaagtctttttctttggtgtcatctacacttttataccttcatct 10743199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 10765685 - 10765621
Alignment:
Q  215 cactttcttctaaaccaaaatgcattctttttctttgttgtcacctccacttttataccatcatct 280  Q
    |||||||||||| |||||| || | ||||||||||||||||||||| || ||||||||| ||||||    
T  10765685 cactttcttctataccaaa-tgaaatctttttctttgttgtcacctacatttttataccttcatct 10765621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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