View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2500_low_7 (Length: 328)
Name: NF2500_low_7
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2500_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 39243390 - 39243687
Alignment:
| Q |
19 |
ccagaaaggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgttatgagag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39243390 |
ccagaaaggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgttatgagag |
39243489 |
T |
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| Q |
119 |
ggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggtaatgctttgtaaatcttgtataacttgaatgagttcatttctttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39243490 |
ggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggtaatgctttgtaaatcttgtataacttgaatgagttcatttctttc |
39243589 |
T |
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| Q |
219 |
ttgcttcttttttaacgaaaaaagtttggttgtattattccctatgtaatatatttttatctaaaattaaaacattatgggcgagatatgatgatatt |
316 |
Q |
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| T |
39243590 |
ttgcttcttttttaacgaaaaaagtttggttgtattattccctatgtaatatatttttatctaaaattaaaacattatgggcgagatatgatgatatt |
39243687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 37382228 - 37382376
Alignment:
| Q |
19 |
ccagaaaggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgttatgagag |
118 |
Q |
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|||| ||||||||||||||| ||| |||||| || ||||| ||||||||||| ||| |||| | | ||||| || ||||| |||||||||||||||| |
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| T |
37382228 |
ccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaaatttggaattcatgttatgagag |
37382327 |
T |
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| Q |
119 |
ggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaac |
167 |
Q |
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| T |
37382328 |
ggattagcacacaagctgtgaatgcaaacacccctatcctagatacaac |
37382376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 37374892 - 37375041
Alignment:
| Q |
25 |
aggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgttatgagagggataa |
124 |
Q |
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|||||||||||||| | | ||| || || ||||| ||||||||||| |||||||| | | |||||||||||||| |||||| ||||| |||||| | |
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| T |
37374892 |
aggtggccttcttccaatggtggaaatggattcagtgaagtagctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggatta |
37374991 |
T |
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| Q |
125 |
gcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta |
174 |
Q |
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| T |
37374992 |
gcacacaagctgtgaatgcaaacacccctatcctagatacagcaacggta |
37375041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 37360064 - 37360219
Alignment:
| Q |
19 |
ccagaaaggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgttatgagag |
118 |
Q |
| |
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|||| |||||||||||| || || |||||| || |||| |||| ||||||| ||| |||| | | ||||| |||||||| |||||| ||||| || |
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| T |
37360064 |
ccagtaaggtggccttcatccaaaagtgggaatggattcaccgaaatagctaagaaagtacatagcttaggtttgaagtttggaattcatattatggcag |
37360163 |
T |
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| Q |
119 |
ggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta |
174 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
37360164 |
ggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggta |
37360219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 37367931 - 37367845
Alignment:
| Q |
88 |
ggtttaaagtttgggattcatgttatgagagggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta |
174 |
Q |
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||||| |||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
37367931 |
ggtttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggta |
37367845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 41230380 - 41230225
Alignment:
| Q |
19 |
ccagaaaggtggccttcttcacaagatgggaaagggttcagcgaagtagctaatcgagtgcataacatgggtttaaagtttgggattcatgttatgagag |
118 |
Q |
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|||| ||||||||||||||| || | |||||| ||||| || ||||||||||| ||| |||| | | |||||||||||||| |||||| ||||||||| |
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| T |
41230380 |
ccaggaaggtggccttcttcccatggtgggaatgggttaagtgaagtagctaagaaagtacatagcttaggtttaaagtttggaattcatattatgagag |
41230281 |
T |
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| Q |
119 |
ggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta |
174 |
Q |
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||||||||||||||||||| ||||||| || ||||| ||||||||| ||| |||| |
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| T |
41230280 |
ggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggta |
41230225 |
T |
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