View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2500_low_8 (Length: 305)
Name: NF2500_low_8
Description: NF2500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2500_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 24885331 - 24885037
Alignment:
| Q |
1 |
cgctacattcggtggccgacttcaacgcagattcaagcccttccttatcgcactcgagctcagccaccctcttagtcaattcctctgcatatttgtgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24885331 |
cgctacattcggtggccgacttcaacgcagattcaagccctttcttatcgcgctcgagctcagccaccctcttagtcaattcctccgcatatttgtgagt |
24885232 |
T |
|
| Q |
101 |
agcattaactattcctcgtacttggttagggcctggatttctttgtctttatgagaaaacttcatgatcacacccatctaaatttcatgcttgtccttgt |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24885231 |
agcattaactattcctcgtgcttggttagggcctggatttctttgtctttatgagaacactccataatcacacccatctaaatttcatgcttgtccttgt |
24885132 |
T |
|
| Q |
201 |
aatcaacaacgtcggctccaacttggccaaattaagctcaaaggccaccttcttattaaagaatctctcaggtcaggcctcgtactcactctctg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24885131 |
aatcaacaacgtcggctccaacttggccaaattaagctcaaaggccaccttcttattaaagaatctctcagctcaggcctcgtactcactctctg |
24885037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University