View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_high_10 (Length: 362)
Name: NF2501_high_10
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 1439802 - 1439467
Alignment:
| Q |
19 |
gaagcatcaacacagacaacacggaaatggaaggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcaaaaagag |
118 |
Q |
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| T |
1439802 |
gaagcatcgacacagacaacacggaaatggaaggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcgaaaagag |
1439703 |
T |
|
| Q |
119 |
tggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1439702 |
tggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctt |
1439603 |
T |
|
| Q |
219 |
tacttttttaccttctgcaagagaaaccacattggttaaaagtgttgtttctcacnnnnnnnnnatcaaggttgcgttgctgattattgctagttcttta |
318 |
Q |
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| T |
1439602 |
tacttttttaccttctgcaagagaaaccacattggttaaaagtgttgtttctcac-ttttttttatcaaggttgcgttgctgattattgctagttcttta |
1439504 |
T |
|
| Q |
319 |
tgctatcattatatcaagtatagttgtacctttgctt |
355 |
Q |
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| T |
1439503 |
tgctatcattatatcaagtatagttgtacctttgctt |
1439467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 250
Target Start/End: Complemental strand, 28091081 - 28090882
Alignment:
| Q |
51 |
ggatgaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagt |
150 |
Q |
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| T |
28091081 |
ggatcaataaataaatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaagagagttgtgacttcttcaatgtctttagcacgaagt |
28090982 |
T |
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| Q |
151 |
gaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaaccacat |
250 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || |||||||||| ||||||||||||||||||||||||||||| |
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| T |
28090981 |
gaaaatgcctccacattggttaagcatcttactgttctgtcgctagtcaaaccctggccgtgaagctttatttttttaccttctgcaagagaaaccacat |
28090882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 28047244 - 28047066
Alignment:
| Q |
68 |
accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
167 |
Q |
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| T |
28047244 |
accttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacatt |
28047145 |
T |
|
| Q |
168 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
246 |
Q |
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|||||||||| |||| |||||||||||||| || || |||||||||| |||||| ||||||| |||| ||||||||||| |
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| T |
28047144 |
ggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaacc |
28047066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 28035038 - 28034860
Alignment:
| Q |
68 |
accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
167 |
Q |
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||||||| ||| |||||| ||||||||||||||||||||| ||| ||||| || ||||| ||||||||||||||| ||||||||||||||| ||||| |
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| T |
28035038 |
accttatgacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtgacttcctcaatgtctttagcgtcgagtgaaaatgcctccacatt |
28034939 |
T |
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| Q |
168 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
246 |
Q |
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|||||||||| ||||||||||||||||||| || || |||||| ||| ||||||||||||||| ||| ||||||||||| |
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| T |
28034938 |
ggttaagcattttactgttctgtcactagttaagccatgtcctcgaatctttacttttttaccgtctacaagagaaacc |
28034860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 27916680 - 27916502
Alignment:
| Q |
68 |
accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
167 |
Q |
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||||||| ||| ||||||| ||||||||||||||| | ||| ||||||||| || |||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
27916680 |
accttatgacttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgacttcttcaatgtctttagcttcgagtgaaaatgcctccacatt |
27916581 |
T |
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| Q |
168 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
246 |
Q |
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| T |
27916580 |
ggttaagcaatttactgttctgtcactaattaagtcctgtccttgaatctttacttttttaccttctacaagagaaacc |
27916502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 245
Target Start/End: Complemental strand, 28001698 - 28001508
Alignment:
| Q |
55 |
gaataaataaacaaccttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaa |
154 |
Q |
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|||||||| || ||||||| ||||||||| |||||||||||||||||| |||||||||||| | | |||||||||||||||| |||||||||||| |
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| T |
28001698 |
gaataaattaatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaagagttgcgagttcttcaatgtctttaacgcggagtgaaa |
28001599 |
T |
|
| Q |
155 |
atgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaac |
245 |
Q |
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| T |
28001598 |
atgcctccacattggttaagcattttactgatctggtactagttaagccccatccttgaagctttacttttttaccttctacgagagaaac |
28001508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 68 - 246
Target Start/End: Complemental strand, 28074419 - 28074241
Alignment:
| Q |
68 |
accttataactccttgaacacgagggctccgcaagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
167 |
Q |
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||||||| ||| |||||| ||||||||| |||||||||||| |||| |||| || ||||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
28074419 |
accttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctccaaatt |
28074320 |
T |
|
| Q |
168 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
246 |
Q |
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|||||||||||||||||||||||||||| | || | ||| |||||| |||||||| ||||||||| ||||||||||| |
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| T |
28074319 |
ggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctacaagagaaacc |
28074241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 28017252 - 28017118
Alignment:
| Q |
100 |
aagaatcttgcaaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtca |
199 |
Q |
| |
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|||| |||||||||| |||| || ||||||||||| |||||||| |||| |||||||||| |||| |||||||||| ||||||||||||||||||| | |
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| T |
28017252 |
aagagtcttgcaaaatgagttgtgacttcttcaatagctttagcgtcgagtaaaaatgcctccacatcggttaagcattttactgttctgtcactagtta |
28017153 |
T |
|
| Q |
200 |
atccttgtccttgaagctttacttttttaccttct |
234 |
Q |
| |
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| || |||||||||| |||||||| |||||||||| |
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| T |
28017152 |
agccatgtccttgaatctttacttctttaccttct |
28017118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 28533757 - 28533667
Alignment:
| Q |
148 |
agtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaa |
238 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||| |||| ||| | |||| |||||| ||||| ||||||||||||| ||||||| |
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| T |
28533757 |
agtgaaaatgcctccacatttgttaagcactttactgtcctgttgctaattaatctctgtcctggaagccttacttttttaccatctgcaa |
28533667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 28090824 - 28090791
Alignment:
| Q |
322 |
tatcattatatcaagtatagttgtacctttgctt |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
28090824 |
tatcattatatcaagtatagttgtacctttgctt |
28090791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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