View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_high_13 (Length: 353)
Name: NF2501_high_13
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 41899844 - 41899523
Alignment:
| Q |
19 |
ttcacctcctccaccatatattcataaatcaccttccccttctcgtcatgtcctcaagcatccggcttatcaccttccctacctctataactctccacca |
118 |
Q |
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| T |
41899844 |
ttcacctcctccaccatatattcataaatcaccttccccttctcgtcatgtcctcaagcatccggcttatcaccttccctacctctataactctccacca |
41899745 |
T |
|
| Q |
119 |
ccacctccaagagtctattgatgcggctaaatcaacttaatttgtttcaatattttgcattacattatcgctatttcatttatatcagggtctacatcaa |
218 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41899744 |
cctcctccaagagtctattgatgcggctaaaccaacttaatttgtttcaatattatgcattacattatcgctatttcatttatatcagggtctacatcaa |
41899645 |
T |
|
| Q |
219 |
agagcattgctatgaatgtagccctattgtatcattttgtttcattctcaattcaaaagtttgttttgttctaaacattcttcgtattatattgtacatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41899644 |
agagcattgctatgaatgtagccctattgtatcattttgtttcattctcaattcaaaagtttgttttgttctaaacattcttcgtattatattgtatatt |
41899545 |
T |
|
| Q |
319 |
ggaactgttgttaagtctattc |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41899544 |
ggaactgttgttaagtctattc |
41899523 |
T |
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