View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2501_high_27 (Length: 228)

Name: NF2501_high_27
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2501_high_27
NF2501_high_27
[»] scaffold0455 (3 HSPs)
scaffold0455 (18-209)||(12490-12681)
scaffold0455 (17-81)||(13165-13230)
scaffold0455 (18-81)||(12800-12864)
[»] chr6 (4 HSPs)
chr6 (18-209)||(28134454-28134645)
chr6 (18-81)||(12943965-12944029)
chr6 (17-81)||(28135129-28135194)
chr6 (18-81)||(28134764-28134828)
[»] chr7 (2 HSPs)
chr7 (18-81)||(29831947-29832011)
chr7 (18-81)||(29261343-29261407)
[»] chr2 (1 HSPs)
chr2 (18-81)||(14100268-14100332)
[»] chr5 (1 HSPs)
chr5 (18-81)||(30626995-30627059)
[»] chr4 (1 HSPs)
chr4 (18-81)||(4920962-4921026)
[»] chr1 (1 HSPs)
chr1 (18-81)||(27288193-27288257)
[»] chr8 (1 HSPs)
chr8 (18-81)||(30940357-30940421)
[»] chr3 (1 HSPs)
chr3 (18-81)||(50648650-50648714)


Alignment Details
Target: scaffold0455 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 12681 - 12490
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaactgaaattttcagatcaaaatctgataggtaagtcgagaatttctagtagtgcatgtctctctctttttatgt 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12681 cttaatagagtaagaaggaagtaggaactggaattttcagatcagaatctgataggtaagtcgagaatttctagtagtgcatgtctctctctttttatgt 12582  T
Q  118 ttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaaatcaatttgttgaaaggaaagttgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12581 ttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaaatcaatttgttgaaaggaaagttgc 12490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 13230 - 13165
Alignment:
Q  17 acttaatagagtaagaaggaagtaggaactg-aaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||||||||||||||||||||||||||| || ||||||||||  |||||| ||||||||||||    
T  13230 acttaatagagtaagaaggaagtaggaactgtaatttttcagatcggaatctggtaggtaagtcga 13165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 12864 - 12800
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||| ||||| |||||||||||||| |||| ||||||||||| ||||| || || |||||||    
T  12864 cttaatatagtaaaaaggaagtaggaacttgaatttttcagatcagaatctaattggaaagtcga 12800  T

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Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 28134645 - 28134454
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaactgaaattttcagatcaaaatctgataggtaagtcgagaatttctagtagtgcatgtctctctctttttatgt 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134645 cttaatagagtaagaaggaagtaggaactggaattttcagatcagaatctgataggtaagtcgagaatttctagtagtgcatgtctctctctttttatgt 28134546  T
Q  118 ttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaaatcaatttgttgaaaggaaagttgc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134545 ttttcacttccatttggtcttgttctatttgaactgaataccagaagtagtgtgagtagcttcacaaatcaatttgttgaaaggaaagttgc 28134454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12943965 - 12944029
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaact-gaaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  12943965 cttaatagagtaagaaggaagtaggaatttgaaattttcagatcaaaatctaattggtaagtcga 12944029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 28135194 - 28135129
Alignment:
Q  17 acttaatagagtaagaaggaagtaggaactg-aaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||||||||||||||||||||||||||| || ||||||||||  |||||| ||||||||||||    
T  28135194 acttaatagagtaagaaggaagtaggaactgtaatttttcagatcggaatctggtaggtaagtcga 28135129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 28134828 - 28134764
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||| ||||| |||||||||||||| |||| ||||||||||| ||||| || || |||||||    
T  28134828 cttaatatagtaaaaaggaagtaggaacttgaatttttcagatcagaatctaattggaaagtcga 28134764  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 29832011 - 29831947
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    |||||||||||||||||||||||||||| |||| |||||||||  ||||||||| ||||||||||    
T  29832011 cttaatagagtaagaaggaagtaggaacttgaatttttcagattgaaatctgattggtaagtcga 29831947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 29261343 - 29261407
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaactgaaa-ttttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||||  |||||||| || |||||||    
T  29261343 cttaataaagtagaaaggaagtaggaactgaaatttttcagatcggaatctgattggcaagtcga 29261407  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 14100268 - 14100332
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    |||||||||||||||||||||||||||| ||||||||||||||  |||||| || ||||||||||    
T  14100268 cttaatagagtaagaaggaagtaggaacttgaaattttcagattgaaatctaattggtaagtcga 14100332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 30626995 - 30627059
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaa-ctgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    |||||||||||||||||||||||||||  |||||||| |||||| |||||| || ||||||||||    
T  30626995 cttaatagagtaagaaggaagtaggaatttgaaatttgcagatcgaaatctaattggtaagtcga 30627059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 4920962 - 4921026
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    |||||||||||||||||||||||||||| ||||||||| ||||  |||||| || ||||||||||    
T  4920962 cttaatagagtaagaaggaagtaggaacttgaaatttttagattgaaatctaattggtaagtcga 4921026  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 27288193 - 27288257
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||  ||| |||| ||||||||||    
T  27288193 cttaaaagagtaagaaggaagtaggaacttgaatttttcagatcggaatttgattggtaagtcga 27288257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 30940421 - 30940357
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaactgaaa-ttttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||||  |||||||| || |||||||    
T  30940421 cttaataaagtagaaaggaagtaggaactgaaatttttcagatcggaatctgattggcaagtcga 30940357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 50648714 - 50648650
Alignment:
Q  18 cttaatagagtaagaaggaagtaggaac-tgaaattttcagatcaaaatctgataggtaagtcga 81  Q
    ||||||||||||||| |||||||||||| |||| |||||||||  |||| || | ||||||||||    
T  50648714 cttaatagagtaagatggaagtaggaacttgaatttttcagattgaaatatgtttggtaagtcga 50648650  T

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