View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_high_30 (Length: 214)
Name: NF2501_high_30
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_high_30 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 2828747 - 2828587
Alignment:
| Q |
17 |
gaaaacgaccgtacaaattattacatgttgagaaatattatgtga-aaaacaaccttaaaaataatttaccgtgt-nnnnnnnttattaacatggaaaac |
114 |
Q |
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| T |
2828747 |
gaaaacaaccgtacaaattattacatgttgagaaatattatgtgaaaaaacaaccttaaaaataatttaccgtgtaaaaaaatttattaacatggaaaac |
2828648 |
T |
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| Q |
115 |
atatgtaccaaattttgttgaaaatgactcnnnnnnnttagaaagaattaaattattgtta |
175 |
Q |
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| T |
2828647 |
atatgtaccaaattttgttgaaaatgactcaaaaaaattagaaagaattaaattattgtta |
2828587 |
T |
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Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 33113 - 33186
Alignment:
| Q |
98 |
ttattaacatggaaaacatatgtaccaaattttgttgaaaatgactcnnnnnnnttagaaagaattaaattatt |
171 |
Q |
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| T |
33113 |
ttattaaaatggaaaacatatataccaaattttgtttaaaatgactcaaaaaaattagaaagaattaaattatt |
33186 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 45446687 - 45446721
Alignment:
| Q |
110 |
aaaacatatgtaccaaattttgttgaaaatgactc |
144 |
Q |
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| T |
45446687 |
aaaatatatgtaccaaattttgttgaaaatgactc |
45446721 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 47044758 - 47044698
Alignment:
| Q |
31 |
aaattattacatgttgagaaatattatgtga-aaaacaaccttaaaaataatttaccgtgt |
90 |
Q |
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| T |
47044758 |
aaattattacatgtagaataatattatgtgaaaaaatgaccttaaaaatagtttaccgtgt |
47044698 |
T |
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