View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_high_5 (Length: 466)
Name: NF2501_high_5
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 53597638 - 53597183
Alignment:
| Q |
1 |
caaagtggaacattcttttcctgaagatggtttcaaattaggagagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagct |
100 |
Q |
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| T |
53597638 |
caaagtggaacattcttttcctgaagatggtttcaaattaggagagaatatatattggggtagtggctctgattggacaccaacggatgctgtaaaagct |
53597539 |
T |
|
| Q |
101 |
tgggctgatgaagagaaatattacacatatgtgactaattcatgtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaa |
200 |
Q |
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| T |
53597538 |
tgggctgatgaagagaaatattacacatatgtgactaattcatgtgtatctggtcaaatgtgtggacattatactcagattgtgtggaaaagtactagaa |
53597439 |
T |
|
| Q |
201 |
gaattggttgtgcaagagttgtgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgttggtaattatgttggagaacgaccatattaatt |
300 |
Q |
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| T |
53597438 |
gaattggttgtgcaagagttgtgtgtgatgatggagatgtgttcatgacttgtaactatgatcctgttggtaattatgttggagaacgaccatattaatt |
53597339 |
T |
|
| Q |
301 |
taattaatcatataagtatgtatattggttatatatggtagtgtgaattcagttctttagtccttttaaactagcaatatgagtatattgtatgttggta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53597338 |
taattaatcatataagtatgtatattggttatatatggtagtgtgaattcagttatttagtccttttaaactagcaatatgagtatattgtatgttggta |
53597239 |
T |
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| Q |
401 |
taaattgagcaaatgtgtatggttgagatttgtgaatagttattaaattgcctttg |
456 |
Q |
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|||||||||| |||||||||||||| || |||||||||||||||||||||| |||| |
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| T |
53597238 |
taaattgagcgaatgtgtatggttgtgacttgtgaatagttattaaattgcatttg |
53597183 |
T |
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