View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_1 (Length: 698)
Name: NF2501_low_1
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 19 - 688
Target Start/End: Complemental strand, 24243167 - 24242498
Alignment:
| Q |
19 |
tcttgcttcccttgaatatcttaaatttgaaggaaaccaatttgaattccctatttcattcaaacaattttccaatcattcaaaccttaagttcatctat |
118 |
Q |
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| T |
24243167 |
tcttgcttcccttgaatatcttaaatttgaaggaaaccaatttgaattccctatttcattcaaacaattttccaatcattcaaaccttaagttcatctat |
24243068 |
T |
|
| Q |
119 |
ggtaatgggaacaaagtcatccttgacttacactcaactttggaaacatgggttcccaaatttcaattgcaagtgcttcaattgtcttcaacaactaagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24243067 |
ggtaatgggaacaaagtcatccttgacttacactcaactttggaaacatgggttcccaaatttcaattgcaagtgcttcaattgtcttcaacaactaagg |
24242968 |
T |
|
| Q |
219 |
caaattccattccacttccaaactttcttttttaccaatacaatttgactgatgtagatttcactggttgtagactaagtggagaatttccaaattggtt |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24242967 |
caaattccattccacttccaaactttctcttttaccaatacaatttgactgatgtagatttcactggttgtaaactaagtggagaatttccaaattggtt |
24242868 |
T |
|
| Q |
319 |
attagaaaacaacacaaaaatggaagatcttactctcgagagttgttcatttgtaggagatttccagcttccttctcgtcccaatctcaacatggtaaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24242867 |
attagaaaacaacacaaaaatggaagatcttactctcgagagttgttcatttgtaggagatttccagcttccttctcgtcccaatctcaacatggtaaga |
24242768 |
T |
|
| Q |
419 |
attgatatatccaacaatgcaataactggtcaaatgttgagcaataacatcagttcaatttttccaaatttgattcttctaaacatgtctagaaatgcaa |
518 |
Q |
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| T |
24242767 |
attgatatatccaacaatgcaataactggtcaaatgttgagcaataacatcagttcaatttttccaaatttgattcttctaaacatgtctagaaatgcaa |
24242668 |
T |
|
| Q |
519 |
ttcatggtacaattccctctgagctatttcacttgagctttttaaatgcattggacatgtctgataatcaattatctggagaaataccatataacttaac |
618 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24242667 |
ttcatggtacaattccctctgagctatgtcacttgagctttttaaatgcattggacatgtctgataatcaattatctggagaaataccatataacttaac |
24242568 |
T |
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| Q |
619 |
cagagatgggaatgatctcacatatttaagattttcaaacaacaatcttcatggacttatacctcctatg |
688 |
Q |
| |
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| T |
24242567 |
tagagatgggaatgatctcacacatttaagattttcaaacaacaatcttcatggacttatacctcctatg |
24242498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 24 - 615
Target Start/End: Complemental strand, 24257920 - 24257329
Alignment:
| Q |
24 |
cttcccttgaatatcttaaatttgaaggaaaccaatttgaattccctatttcattcaaacaattttccaatcattcaaaccttaagttcatctatggtaa |
123 |
Q |
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|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24257920 |
cttcccttgaatatctgaattttgaaggaaaccaattcgaattccctatttcattcacacaattttccaatcattcaaaccttaagttcatctacggtaa |
24257821 |
T |
|
| Q |
124 |
tgggaacaaagtcatccttgacttacactcaactttggaaacatgggttcccaaatttcaattgcaagtgcttcaattgtcttcaacaactaaggcaaat |
223 |
Q |
| |
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||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||| ||||| |||| ||| || ||| |
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| T |
24257820 |
tgggaacaaagtcatccttgactcacactcaactatgaaaacatgggttcccaaatttcagttgcaagtgcttcagttgtcatcaataaccgagttcaat |
24257721 |
T |
|
| Q |
224 |
tccattccacttccaaactttcttttttaccaatacaatttgactgatgtagatttcactggttgtagactaagtggagaatttccaaattggttattag |
323 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||| |||||| ||||| || |||||||||||||||| |
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| T |
24257720 |
tccattccacttccaaactttcttctttaccaatacaatttaacttatgtggatttcactggttgtaaactaagaggagagttcccaaattggttattag |
24257621 |
T |
|
| Q |
324 |
aaaacaacacaaaaatggaagatcttactctcgagagttgttcatttgtaggagatttccagcttccttctcgtcccaatctcaacatggtaagaattga |
423 |
Q |
| |
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|||||||||||||||||||| |||||| ||| | | |||||| ||||||||| ||||||||||||| || | ||| ||||||||||| || |||||| |
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| T |
24257620 |
aaaacaacacaaaaatggaaaatcttattcttcaaaattgttcctttgtaggaaatttccagcttccatcccatcctcctctcaacatggcaacaattga |
24257521 |
T |
|
| Q |
424 |
tatatccaacaatgcaataactggtcaaatgttgagcaataacatcagttcaatttttccaaatttgattcttctaaacatgtctagaaatgcaattcat |
523 |
Q |
| |
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| |||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
24257520 |
tgtatcttacaatgcaataacaggtcaaatgttgagtaataatatcagttcaatttttccaaatttggttcatctaaacatgtctagaaatgcaattcac |
24257421 |
T |
|
| Q |
524 |
ggtacaattccctctgagctatttcacttgagctttttaaatgcattggacatgtctgataatcaattatctggagaaataccatataactt |
615 |
Q |
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||| ||||||| | |||||||| |||||||||| ||||| | |||||| | ||||||||| |||| ||||||||||||||| ||||||| |
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| T |
24257420 |
ggttcaattccttatgagctatgccacttgagctctttaagggttttggacctatctgataatgaattgtctggagaaataccaaataactt |
24257329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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