View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_10 (Length: 439)
Name: NF2501_low_10
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 5812340 - 5811929
Alignment:
| Q |
18 |
ccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggcaagaagacaattcta |
117 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812340 |
ccttgtccgtggagttggcattcaataaaaaaggacaataaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggcaagaagacaattcta |
5812241 |
T |
|
| Q |
118 |
aggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactacagttgtatccaatga |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812240 |
aagacattgatgacctgaagcttcaagattttcttcaggtcatgcaacctcgcgcaaagtctaagctgtgggcaaacgaaactacagttgtatccaatga |
5812141 |
T |
|
| Q |
218 |
tggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagttggattaccaaataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812140 |
tggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagttggattaccaaataat |
5812041 |
T |
|
| Q |
318 |
cccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagattggtccgattctgaaa |
417 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812040 |
cccgaatctgacaagtcacgtgagcttaatcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagattggtccgattctgaaa |
5811941 |
T |
|
| Q |
418 |
gcagtgatgatg |
429 |
Q |
| |
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|||||||||||| |
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| T |
5811940 |
gcagtgatgatg |
5811929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 429
Target Start/End: Complemental strand, 37743906 - 37743499
Alignment:
| Q |
22 |
gtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggcaagaagacaattctaagga |
121 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||||||||||||| ||| || | ||||||||||||||||| | || ||||||||||||| ||| |
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| T |
37743906 |
gtccgtggagtcgacattcaacaaaaaaggacgataaagtgatcaccacagatgttagcaatcatgctagagctaaggaacatgaagacaattctatgga |
37743807 |
T |
|
| Q |
122 |
cattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactacagttgtatccaatgatggt |
221 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||| |||||||||||||||||||| |
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|
| T |
37743806 |
cattgatgacccaaagcttcaagattttcttcaggtcatgcaacctcgggcaatgtctaagctgtgggcaaatgatacttcagttgtatccaatgatggt |
37743707 |
T |
|
| Q |
222 |
aacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagttggattaccaaataatcccg |
321 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | |||||| |||||||||| ||||||||||||| ||| ||| |||| || ||||||||||| || |
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|
| T |
37743706 |
aacaaccaaccaacactgaataaggagaccgaaagtacattaattgcaaaccatcctatcttaagcgactcacatgtagatgagttaccaaataacccta |
37743607 |
T |
|
| Q |
322 |
aatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagattggtccgattctgaaagcag |
421 |
Q |
| |
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|||| || ||||| ||||| |||||||||||||||| || |||||||| ||||||||||||| |||||||||||| || ||||| |||||||||||||| |
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| T |
37743606 |
aatccgacaagtcgcgtgatattaagcatgatggagtaatttctgatatggattatttcaagagtaaagtgacaacggagtggtctgattctgaaagcag |
37743507 |
T |
|
| Q |
422 |
tgatgatg |
429 |
Q |
| |
|
|||||||| |
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|
| T |
37743506 |
tgatgatg |
37743499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 429
Target Start/End: Original strand, 38601215 - 38601622
Alignment:
| Q |
22 |
gtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggcaagaagacaattctaagga |
121 |
Q |
| |
|
|||||||||||| ||||||| |||||| | || |||||||||||||||| || || |||||||||||||||||||| || ||||||||||||| ||| |
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|
| T |
38601215 |
gtccgtggagtcaacattcaacaaaaaaagtcaataaagtgatcaccccacatgttaacaatcatgctagagctaaaggacatgaagacaattctatgga |
38601314 |
T |
|
| Q |
122 |
cattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactacagttgtatccaatgatggt |
221 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||| |||||||||||||||||||| |
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|
| T |
38601315 |
aattgatgacccaaaacttcaagattttcttcaggtcatgcaacctcgggcaatgtctaagctgtgggcaaatgatacttcagttgtatccaatgatggt |
38601414 |
T |
|
| Q |
222 |
aacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagttggattaccaaataatcccg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||| |||||||| ||||||||||||| ||| |||||||| || ||||||||| || || |
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|
| T |
38601415 |
aacaaccaagcaacattgaataaggagaccgaaaggacatcagttgcaaaccatcctatcttaagcgactcacaagtagatgaattaccaaaaaacccta |
38601514 |
T |
|
| Q |
322 |
aatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagattggtccgattctgaaagcag |
421 |
Q |
| |
|
|||| || ||| |||||||||||||||||||||||| || |||||||| ||||||||||||| ||| | ||||| || ||||| |||||||||||||| |
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|
| T |
38601515 |
aatccgataagaaacgtgagcttaagcatgatggagtaatctctgatatggattatttcaagagcaaattaacaacggagtggtctgattctgaaagcag |
38601614 |
T |
|
| Q |
422 |
tgatgatg |
429 |
Q |
| |
|
|||||||| |
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|
| T |
38601615 |
tgatgatg |
38601622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 27 - 429
Target Start/End: Complemental strand, 37765096 - 37764694
Alignment:
| Q |
27 |
tggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggcaagaagacaattctaaggacattg |
126 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||| | ||||||||| || || ||| ||||||||||||||| || ||||||||||||| |||||||| |
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|
| T |
37765096 |
tggagtcgacattcaagaaaaaaagacactaaagcgttcaccccagatgtcaacaattgtgctagagctaaaggacatgaagacaattctatggacattg |
37764997 |
T |
|
| Q |
127 |
atgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactacagttgtatccaatgatggtaacaa |
226 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||| || | |||| |||||||||||||||||| |||||| |||||| |||||||||||||| ||| |
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|
| T |
37764996 |
atgacctgaagcttcgagaatttcttcaggtcatgcaatctcgagcaacgtctaagctgtgggcaaatgaaacttcagttgcatccaatgatggtagcaa |
37764897 |
T |
|
| Q |
227 |
ccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagttggattaccaaataatcccgaatct |
326 |
Q |
| |
|
||||||||||||||||||| |||| | | |||||| |||||||| ||||||||||||| ||| |||| ||| || ||||||||||| || |||| |
|
|
| T |
37764896 |
ccaagcaacattgaataagaagactgaaagaacatcagttgcaaaccatcctatcttaagcgactcacaattagatgagttaccaaataaccctaaatcc |
37764797 |
T |
|
| Q |
327 |
gaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagattggtccgattctgaaagcagtgatg |
426 |
Q |
| |
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| ||| |||||||||||||| ||||||||| || ||||||| ||||||||||||| |||||||||||| || ||||| ||||||||||||||||||| |
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|
| T |
37764796 |
aataagaaacgtgagcttaagcctgatggagtaatccctgatatggattatttcaagagtaaagtgacaacggagtggtctgattctgaaagcagtgatg |
37764697 |
T |
|
| Q |
427 |
atg |
429 |
Q |
| |
|
||| |
|
|
| T |
37764696 |
atg |
37764694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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