View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_11 (Length: 417)
Name: NF2501_low_11
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 26885993 - 26886389
Alignment:
| Q |
17 |
aaatataacaaatgtgaacattgaaattggtgatcattgcattactatactctcaggtactaggaatgttcgaattttaaatgtttttgtggttttggtc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26885993 |
aaatataacaaatgtgaacattgaaattggtgatcattgcattactatgctctcaggtactaggaatgttcgaattttaaatgtttttgtggttttggtc |
26886092 |
T |
|
| Q |
117 |
atgaaattaatgtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26886093 |
atgaaattaatgtcggaagtctaggcaagtatgaaagtgaataagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgt |
26886192 |
T |
|
| Q |
217 |
tagaatcaaatcatgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattccattgtc |
316 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26886193 |
tagaatcaaatcatgggagtctcagttgaagtaaactttggttgcttttaattttatatataaagatattgtgatggataatgtgcaataccccattgtc |
26886292 |
T |
|
| Q |
317 |
attgattgatcaagattattgtccacattctctgtgcttcaaaaaggcttgtactatttcttggtttgaatattatacttttagattcatctcactc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
26886293 |
attgattgatcaagattattgtccacattctctgtgcttcaaaaaggtttgtactatttcttggttcaaatattatacttttagattcaactcactc |
26886389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 55 - 405
Target Start/End: Original strand, 26884323 - 26884674
Alignment:
| Q |
55 |
gcattactatactctcaggtactaggaatgttcgaattttaaatgtttt-tgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaag |
153 |
Q |
| |
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|||||||||| |||||| |||||| |||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||| || ||||||||||| |
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| T |
26884323 |
gcattactatgctctcaagtactacgaatgttcgaatttcaaatgttttttgtggtttttgtcatgaaattagtgtcggaagtcttggtaagtatgaaag |
26884422 |
T |
|
| Q |
154 |
tgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaact |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
26884423 |
tgaacaagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatggaagtctcaattgaagtaaact |
26884522 |
T |
|
| Q |
254 |
ttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattccattgtcattgattgatcaagattattgtccacattctctgtgc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26884523 |
ttggttgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgattgatcaagattattgtcctaattctctgtgc |
26884622 |
T |
|
| Q |
354 |
ttcaaaaaggcttgtactatttcttggtttgaatattatacttttagattca |
405 |
Q |
| |
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| |||||||| ||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
26884623 |
tccaaaaaggtttgtactctttcttggttcaaatattatacttttagattca |
26884674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 55 - 405
Target Start/End: Original strand, 26883623 - 26883974
Alignment:
| Q |
55 |
gcattactatactctcaggtactaggaatgttcgaattttaaatgtttt-tgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaag |
153 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
26883623 |
gcattactatgctctcaagtactacgaatgttcgaatttcaaatattttttgtggttttggtcatgaaattagtgtcggaagtcttggtaagtatgaaag |
26883722 |
T |
|
| Q |
154 |
tgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaact |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
26883723 |
tgaacaagatcttgatgacataattgttacaaattgtacctttagtggtacaagtattgatgttagaatcaaatcatgaaagtctcaattgaagtaaact |
26883822 |
T |
|
| Q |
254 |
ttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattccattgtcattgattgatcaagattattgtccacattctctgtgc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
26883823 |
ttggttgcttttaattttgtatataaagatattgtggtggataatgtgcaatatcccattgtcattgattgatcaagattattgtcctaattccctgtgc |
26883922 |
T |
|
| Q |
354 |
ttcaaaaaggcttgtactatttcttggtttgaatattatacttttagattca |
405 |
Q |
| |
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| |||||||| ||||||| |||||||||| ||||||||||||||||||||| |
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| T |
26883923 |
tccaaaaaggtttgtactctttcttggttcaaatattatacttttagattca |
26883974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 368
Target Start/End: Original strand, 11532361 - 11532697
Alignment:
| Q |
29 |
tgtgaacattgaaattggtgatcattgcattactatactctcaggtactaggaatgttcgaattttaaatgttttt-gtggttttggtcatgaaattaat |
127 |
Q |
| |
|
||||||||||| || || ||| |||||||| |||| |||||||||||||||||||||||||||| | |||||||| ||||| |||||||| ||||| | |
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| T |
11532361 |
tgtgaacattggaaccggcgatgattgcattgctatgctctcaggtactaggaatgttcgaatttcagatgttttttgtggtcctggtcatggaattagt |
11532460 |
T |
|
| Q |
128 |
gtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggtacaagtattgatgttagaatcaaat |
227 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||| |||||||||| |||||||| ||||| ||| ||| ||| ||||||| | |||||||||||||| |
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| T |
11532461 |
gtcggaagtcttggtgggaatgaaggtgaagaagatattgatgacattgttgttaagaattgtacctttaatggcacaagtaacggtgttagaatcaaat |
11532560 |
T |
|
| Q |
228 |
catgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatggataatgtgcaatattccattgtcattgattgatc |
327 |
Q |
| |
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| ||||||||||| |||| | |||||||||||| || ||||||| |||| |||||||||||||| ||||||||||| || |||||||| ||||||| |
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| T |
11532561 |
cgtgggagtctcaattgaagaaaactttggttgtttctaattttacatatgaagatattgtgatgaataatgtgcaaaatcccattgtc----attgatc |
11532656 |
T |
|
| Q |
328 |
aagattattgtccacattctctgtgcttcaaaaaggcttgt |
368 |
Q |
| |
|
||||||||||| ||||| ||| ||| ||||||||| |||| |
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|
| T |
11532657 |
aagattattgttcacatcctccatgcatcaaaaaggtttgt |
11532697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 322
Target Start/End: Original strand, 26301555 - 26301774
Alignment:
| Q |
103 |
ttgtggttttggtcatgaaattaatgtcggaagtctaggcaagtatgaaagtgaacaagatcttgatgacatagttgttaaaaattgcacccttagtggt |
202 |
Q |
| |
|
||||||| |||||||| ||| || |||||||||| || ||||||||| ||| ||||||||| |||||| ||||||| |||||||| ||| |||| |
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| T |
26301555 |
ttgtggtcctggtcatggaataaacatcggaagtcttggtaagtatgaagacgaagaagatcttgccgacataattgttaagaattgcacatttaatggt |
26301654 |
T |
|
| Q |
203 |
acaagtattgatgttagaatcaaatcatgggagtctcagttgaggtaaactttggttgcttttaattttgtatataaagatattgtgatggataatgtgc |
302 |
Q |
| |
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|| |||| || |||||||||||||||| ||||| || |||| |||| ||||||||| |||||| ||||| | |||||||||||||| |||||| |
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|
| T |
26301655 |
acgagtaatggagttagaatcaaatcatatgagtcacaattgaacaaaaccgtggttgcttctaatttcatatatgaggatattgtgatggaaaatgtgg |
26301754 |
T |
|
| Q |
303 |
aatattccattgtcattgat |
322 |
Q |
| |
|
| ||| |||||| |||||| |
|
|
| T |
26301755 |
agtatcacattgtaattgat |
26301774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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