View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_14 (Length: 407)
Name: NF2501_low_14
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 391
Target Start/End: Complemental strand, 43462635 - 43462253
Alignment:
| Q |
9 |
acatcatcatcttctaacaatttcacctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaagtgaagtagttccgaattccc |
108 |
Q |
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| T |
43462635 |
acatcatcatcttctaacaatttcacctttgggattaccttgcatgcatacgttttcccggttgatttctccaaacaaagtgaagtagttccaaattccc |
43462536 |
T |
|
| Q |
109 |
cttctccaagttcatctcctaactcatagtattctttaaaagaaccattgtttgacaacaaaattgattcttctcgaagacctgcactttttgctgttac |
208 |
Q |
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| T |
43462535 |
cttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattgattcttctcgaagacctgcactttttgctgttac |
43462436 |
T |
|
| Q |
209 |
cctagattcaattgacttcaaatctttgctgtcgacatgcggtggactttgttgaaccgtctgtgaagcgtttatgtttggtgaaactgaaatttgtgtt |
308 |
Q |
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| T |
43462435 |
cctagattcaattgacttcaaatctttgatgtcgacatgcggtggactttgttgaaccgtctgtgaagcgtttatgtttggtgaaactgaaatttgtgtt |
43462336 |
T |
|
| Q |
309 |
tggtagattggatatgaccatgagcagcaacacgatgttgaaaaaatttcatcggaggtatttctgagtccaacacagttgtt |
391 |
Q |
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| T |
43462335 |
tggtagattggatatgaccatgagcagcaacacgatgttgaaaaaatttcatcggaggtatttctgagtccaacacagttgtt |
43462253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 43453181 - 43452994
Alignment:
| Q |
24 |
aacaatttcacctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaagtgaagtagttccgaattccccttctccaagttcat |
123 |
Q |
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| T |
43453181 |
aacaattttacctttggtattgctttgcatgcgtatgtcttcctggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcat |
43453082 |
T |
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| Q |
124 |
ctcctaactcatagtattctttaaaagaaccattgtttgacaacaaaattgattcttctcgaagacctgcactttttgctgttaccct |
211 |
Q |
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| T |
43453081 |
ctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaaccgattctgctcgaagacctgcactttttggtgttaccct |
43452994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 43452809 - 43452748
Alignment:
| Q |
270 |
tgtgaagcgtttatgtttggtgaaactgaaatttgtgtttggtagattggatatgaccatga |
331 |
Q |
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| T |
43452809 |
tgtgaagaatttgtgttttgtgaaactgaaatttgtgtttggttgattggatatgaccatga |
43452748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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