View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_16 (Length: 382)
Name: NF2501_low_16
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 1191852 - 1191663
Alignment:
| Q |
15 |
tatggaaatgttgaacttggtgagaagctaagaaaacatctattggaattggaacatgtatgcaagcaagagaggatcaatgcaagaaaggagagttcga |
114 |
Q |
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| T |
1191852 |
tatggaaatgttgaacttggtgagaaggtaagaaaacatctattggaattggaatatgtatgcaagcaagagaggatcaatgcaagaaaggagagttcga |
1191753 |
T |
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| Q |
115 |
aaaccagagcctggtaatagctttattggcaatgctggaacgaggtttgagaaagagactgttgaaaggttgttgtaacgttacccagaa |
204 |
Q |
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| T |
1191752 |
aaaccagagcctggtaatagctttattggcaatgctggaacgaggtttgagaaagagactgttgaaaggttgttgtaacgttgcccagaa |
1191663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 215 - 361
Target Start/End: Complemental strand, 1191606 - 1191460
Alignment:
| Q |
215 |
atagttggtcttgtaattattcaggttacaactacagtttttgaaatattgtcatttatacaaaatacatttttgtggaattggaatccttattttggaa |
314 |
Q |
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| T |
1191606 |
atagttggtcttgtaattattcaggttccaactacagtttttgaaatattgttatttatacaaaatacatttttgtggaattggaatccttattttggaa |
1191507 |
T |
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| Q |
315 |
aatagtactattgttttttcttttatctaactatattatttgattca |
361 |
Q |
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| T |
1191506 |
aatagtactattgttttttcttttatctaactatattatttgattca |
1191460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 155181 - 155039
Alignment:
| Q |
219 |
ttggtcttgtaattattcaggttacaactacagtttttgaaatattgtcatttatacaaaatacatttttgtggaattggaatccttattttggaaaata |
318 |
Q |
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| T |
155181 |
ttggtattgtaattattcaggttccaactacagtttttgaaatattgttatttatactaaatacatttttgtggaattggaatccttattttggaaaata |
155082 |
T |
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| Q |
319 |
gtactattgttttttcttttatctaactatattatttgattca |
361 |
Q |
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| T |
155081 |
gtactatagttttttcttttatcttattatattatttgattca |
155039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 155345 - 155227
Alignment:
| Q |
83 |
agagaggatcaatgcaagaaaggagagttcgaaaaccagagcctggtaatagctttattggcaatgctggaacgaggtttgagaaagagactgttgaaag |
182 |
Q |
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| T |
155345 |
agagaagatcaatgcaagaaaggagagttcggaaaccagagcctggtaatagctttattggcattcctggaacgaggtttgagaaagagattgttgaaag |
155246 |
T |
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| Q |
183 |
gttgttgtaacgttaccca |
201 |
Q |
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| T |
155245 |
gttgttgtaacgttaccca |
155227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 155475 - 155421
Alignment:
| Q |
15 |
tatggaaatgttgaacttggtgagaagctaagaaaacatctattggaattggaac |
69 |
Q |
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| T |
155475 |
tatggaaatgttgagcttggtgagaaggtaagaaaacatctaatggaattggaac |
155421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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