View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_18 (Length: 358)
Name: NF2501_low_18
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 9379024 - 9379352
Alignment:
| Q |
16 |
aagaaaggttaacattttcctaaaagaaatcaaaagaatcaggaattaaaaattgaccagtgctaaaagttgccaaactgttttgcacaacaatgtgtgg |
115 |
Q |
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| T |
9379024 |
aagaaaggttaacattttcctaaaagaaatcaaaagaatcaggaattaaaaattgaccagtgctaaaagttgccaaactgttttgcacaacaatgtgtgg |
9379123 |
T |
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| Q |
116 |
catgatagaaatgattttt-acctaactgtatatttttctagaaatagcaacttaattgattggtcaccnnnnnnnctataaagattgatcactttatat |
214 |
Q |
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| T |
9379124 |
catgatagaaatgatttttaacctaactgtatatttttctagaaatagcaacttaattgattggtcacctttttttctataaagattgatcactttatat |
9379223 |
T |
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| Q |
215 |
cacgtttttcatgctgaataggatgtctccaaaattaaacgttagtatttgctaggaataaatcctcaagctttttaacatcccac-ttttttatcaagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
9379224 |
cacgtttttcatgctgaataggatgtctccaaaattaaacgttagtatttgctaggaataaatcctcaagctttgtaacatcccactttttttatcaagt |
9379323 |
T |
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| Q |
314 |
cagctctcatttttctctaacatgagaat |
342 |
Q |
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| T |
9379324 |
cagctctcatttttctctaacatgagaat |
9379352 |
T |
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