View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2501_low_21 (Length: 323)

Name: NF2501_low_21
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2501_low_21
NF2501_low_21
[»] chr4 (3 HSPs)
chr4 (31-305)||(46824834-46825107)
chr4 (104-305)||(21315760-21315964)
chr4 (104-294)||(16961972-16962162)
[»] chr5 (2 HSPs)
chr5 (72-305)||(6888097-6888331)
chr5 (104-164)||(37247415-37247476)
[»] chr7 (1 HSPs)
chr7 (69-298)||(6217826-6218056)
[»] chr6 (2 HSPs)
chr6 (69-305)||(1229400-1229636)
chr6 (217-282)||(3234818-3234883)
[»] chr1 (3 HSPs)
chr1 (69-305)||(43578653-43578890)
chr1 (130-305)||(24908736-24908909)
chr1 (69-223)||(29112275-29112430)
[»] scaffold0006 (1 HSPs)
scaffold0006 (79-305)||(75217-75437)
[»] chr8 (3 HSPs)
chr8 (108-262)||(27054591-27054745)
chr8 (69-232)||(20763008-20763165)
chr8 (261-305)||(20762963-20763007)
[»] scaffold0783 (1 HSPs)
scaffold0783 (69-232)||(1902-2059)
[»] scaffold0191 (1 HSPs)
scaffold0191 (108-282)||(30569-30742)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 31 - 305
Target Start/End: Complemental strand, 46825107 - 46824834
Alignment:
Q  31 tacgttccatttttcagtgaaataattataagtcggacttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaagtataggtggccaccgat 130  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  46825107 tacgtttcatttttcagtgaaataattataagtcagacttttaaatacgggtccgttaccgcgaaaata-ccgcgacaaaaagtataggtggccaccgat 46825009  T
Q  131 accatttttacctgttttcagggtgagatgaaaaatcacaccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaa 230  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||  ||    
T  46825008 accatttttacctgttttcagggtgagatgaaaaatcacatcgaaacagccgttacaaccgtgacaaaaagtcgatacaatcgtataactccgttaggaa 46824909  T
Q  231 tgtgacacaccattacgaaagcgaaaaacacaacaccgttcataagaaaaaatagataatgagagactgtgatga 305  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  46824908 tgtgacacaccattacggaagcgaaaaacacaacaccgttcataagaaaaaatatataatgagaaactgtgatga 46824834  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 104 - 305
Target Start/End: Complemental strand, 21315964 - 21315760
Alignment:
Q  104 cgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatcacaccgaaacagccgttacaaccgtgacaaaaagt 202  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||     
T  21315964 cgacaaaaaggtataggtggtcactgataccgtttttacctgttttcagagtgagatgaaaa-tcacaccgaaacacccgttacaaccgcgacaaaaagc 21315866  T
Q  203 cgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacaccgttcataag---aaaaaatagataatgagagactg 299  Q
     |||||| |||||||||||| ||||  ||| ||||||||||||||||||  ||||||| |||| |||| |||||   ||||||||||||||||||||| |    
T  21315865 tgatacaaccgtataactcctttacggatgcgacacaccattacgaaagttaaaaacataacatcgttgataaggtaaaaaaatagataatgagagacag 21315766  T
Q  300 tgatga 305  Q
    ||||||    
T  21315765 tgatga 21315760  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 104 - 294
Target Start/End: Original strand, 16961972 - 16962162
Alignment:
Q  104 cgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatcacaccgaaacagccgttacaaccgtgacaaaaagt 202  Q
    |||||||||| |||| || |||||  ||||| |||||||||||||| |||||||||||||||||||||| |||||   |||||| ||||||| |||||      
T  16961972 cgacaaaaaggtatatgtagccacatataccgtttttacctgtttttagggtgagatgaaaaatcacactgaaacgctcgttacgaccgtgataaaaaac 16962071  T
Q  203 cgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacaccgttcataagaaaaaatagataatgaga 294  Q
    ||||||| || || ||||||||||| |||| |||||| |||||| ||||||||||||||||||| |||||||||  ||| ||||||||||||    
T  16962072 cgatacaaccataaaactccgttacgaatgcgacacatcattacaaaagcgaaaaacacaacactgttcataag-gaaagtagataatgaga 16962162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 72 - 305
Target Start/End: Complemental strand, 6888331 - 6888097
Alignment:
Q  72 taaatatgggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatcaca 170  Q
    ||||||||||||||||||||| |||||   |||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  6888331 taaatatgggtccgttaccgcgaaaacggacgcgacaaaaaggtataggtggccaccgataccgtttttacctgttttcatggtgagatgaaaaatcaca 6888232  T
Q  171 ccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacaccgtt 270  Q
    ||||| |  ||||||| || ||| ||||||| | |||||||| || ||||| ||||| |||| ||||||||||| || ||| ||||||||||||||||||    
T  6888231 ccgaaccgcccgttacgacggtggcaaaaagccaatacagccataaaactctgttacgaatgcgacacaccattgcggaagtgaaaaacacaacaccgtt 6888132  T
Q  271 cataagaaaaaatagataatgagagactgtgatga 305  Q
    |||||| |||||| |||||||||||||||||||||    
T  6888131 cataaggaaaaatggataatgagagactgtgatga 6888097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 37247415 - 37247476
Alignment:
Q  104 cgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaa 164  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  37247415 cgacaaaaaggtataggtggtcactgataccatttttacctgttttcagggtgagatgaaaa 37247476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 69 - 298
Target Start/End: Original strand, 6217826 - 6218056
Alignment:
Q  69 ttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatc 167  Q
    ||||||||| || ||||||||||| |||||  ||||||||||||| ||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||    
T  6217826 ttttaaatacggatccgttaccgcgaaaacggccgcgacaaaaaggtataggtggtcaccgataccgtttttatctgttttaagggtgagatgaaaaatc 6217925  T
Q  168 acaccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacacc 267  Q
    ||||||||||  ||||||||||| | |||||||| |||| || ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| |    
T  6217926 acaccgaaactcccgttacaaccattacaaaaagccgatgcaaccgtaaaactccgttactaatgcgacacaccattacagaagcgaaaaacacaacaac 6218025  T
Q  268 gttcataagaaaaaatagataatgagagact 298  Q
    ||||||||| ||||||| |||||||||||||    
T  6218026 gttcataaggaaaaatacataatgagagact 6218056  T

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Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 1229636 - 1229400
Alignment:
Q  69 ttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatc 167  Q
    ||||||||| ||||  |||||| | |||||| |||| |||||||| ||||||| | |||||||||| |||||| ||||||| | ||||||||||||||||    
T  1229636 ttttaaatacgggtttgttaccacgaaaacagccgcaacaaaaagatataggtagtcaccgataccgtttttatctgtttttaaggtgagatgaaaaatc 1229537  T
Q  168 acaccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacacc 267  Q
    | |||||||   ||||||||||| |||||||||| ||||||| || || ||||||||||| |||| |||||||||||||| ||||||||| |||||||||    
T  1229536 a-accgaaatgtccgttacaaccttgacaaaaagccgatacaaccttaaaactccgttacgaatgcgacacaccattacggaagcgaaaagcacaacacc 1229438  T
Q  268 gttcataagaaaaaatagataatgagagactgtgatga 305  Q
    |||| |||| |||||||||||| |||||| ||||||||    
T  1229437 gttcctaaggaaaaatagataacgagagattgtgatga 1229400  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 3234883 - 3234818
Alignment:
Q  217 aactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacaccgttcataagaaaaaa 282  Q
    ||||||||||||||||||| |||| |||| |||||||||||||| |||  | |||||||| |||||    
T  3234883 aactccgttacaaatgtgaaacacgattatgaaagcgaaaaacataacttccttcataaggaaaaa 3234818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 43578653 - 43578890
Alignment:
Q  69 ttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaagt-ataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatc 167  Q
    ||||||||| ||||||||||| ||||||| | | |||||||||||  || |||||||||||||||| |||||||||| ||| |||||||||| |||||      
T  43578653 ttttaaatacgggtccgttactgcaaaaatagctgcgacaaaaaggcattggtggccaccgataccgtttttacctgattttagggtgagataaaaaaat 43578752  T
Q  168 acaccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacacc 267  Q
    |||| |||||  ||||||  ||||||||||| || ||||||| ||||| ||||  ||||| |||| |||||||||||| | ||||||||||||||||||     
T  43578753 acactgaaacgcccgttatgaccgtgacaaacagccgatacaaccgtaaaactttgttacgaatgcgacacaccattatggaagcgaaaaacacaacaca 43578852  T
Q  268 gttcataagaaaaaatagataatgagagactgtgatga 305  Q
     |||||||| |||||||||||||| |||| ||||||||    
T  43578853 attcataaggaaaaatagataatgcgagagtgtgatga 43578890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 24908736 - 24908909
Alignment:
Q  130 taccatttttacctgttttcagggtgagatgaaaaatcacaccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaa 229  Q
    |||| ||||||| |||||| ||||||||||||||| |||||| |||||| ||||||| |||||||| ||||| | |||||  |||| ||||||||||| |    
T  24908736 taccgtttttacttgtttttagggtgagatgaaaattcacactgaaacacccgttacgaccgtgac-aaaagccaatacaatcgtaaaactccgttacga 24908834  T
Q  230 atgtgacacaccattacgaaagcgaaaaacacaacaccgttcataagaaaaaatagataatgagagactgtgatga 305  Q
    ||| |||||||||||||| || |||||||||||||| | ||||||||  |||||||||||||||||| ||||||||    
T  24908835 atgcgacacaccattacggaaacgaaaaacacaacaacattcataag-gaaaatagataatgagagattgtgatga 24908909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 29112275 - 29112430
Alignment:
Q  69 ttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatc 167  Q
    ||||||||| |||||||||||||| |||||  ||||||||||||| |||||| || | | |||||| ||||||| ||||||||||||||||| |||||||    
T  29112275 ttttaaatacgggtccgttaccgcgaaaacggccgcgacaaaaaggtataggcggtccctgataccgtttttacttgttttcagggtgagataaaaaatc 29112374  T
Q  168 acaccgaaacagccgttacaaccgtgacaaaaagtcgatacagccgtataactccg 223  Q
    |||| |||||  ||||||| |||||||||||||   |||||| ||||| |||||||    
T  29112375 acactgaaacgcccgttacgaccgtgacaaaaaactgatacaaccgtaaaactccg 29112430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 305
Target Start/End: Original strand, 75217 - 75437
Alignment:
Q  79 gggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatcacaccgaaac 177  Q
    |||||||||||||| |||||  ||||||||||||| |||||||||||||||||||  ||||||||        || ||||||||||||||||||||||||    
T  75217 gggtccgttaccgcgaaaacggccgcgacaaaaaggtataggtggccaccgatactgtttttacc--------ggatgagatgaaaaatcacaccgaaac 75308  T
Q  178 agcc-gttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacaccgttcataag 276  Q
      || ||||| ||||||||||| |  ||||||  ||||   |||||||||||||||  | |||||||||||   ||||||||||||||||||||||||||    
T  75309 gccccgttacgaccgtgacaaacatccgatacgaccgtgagactccgttacaaatgcaatacaccattacggttgcgaaaaacacaacaccgttcataag 75408  T
Q  277 aaaaaatagataatgagagactgtgatga 305  Q
     ||||||||||||||||||||||||||||    
T  75409 gaaaaatagataatgagagactgtgatga 75437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 262
Target Start/End: Complemental strand, 27054745 - 27054591
Alignment:
Q  108 aaaaagtataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatcacaccgaaacagccgttacaaccgtgacaaaaagtcgata 207  Q
    |||| |||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||| |||||    ||||| ||||||| ||||||||||||    
T  27054745 aaaaggtataggtagccaccggtaccgtttttacctgtttttaggatgagatgaaaaatcacactgaaacgcttgttacgaccgtgataaaaagtcgata 27054646  T
Q  208 cagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacaca 262  Q
    || || || |||||||||   |||| |||||||||||||| ||||||||||||||    
T  27054645 caaccttaaaactccgttgtgaatgcgacacaccattacggaagcgaaaaacaca 27054591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 232
Target Start/End: Complemental strand, 20763165 - 20763008
Alignment:
Q  69 ttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatc 167  Q
    ||||||||| |  ||||||||||| |||||  ||||||||||||| ||||||||||||| |||||| ||||||||        |||||||||||||||||    
T  20763165 ttttaaatacgtttccgttaccgcgaaaacggccgcgacaaaaaggtataggtggccactgataccgtttttacc--------gggtgagatgaaaaatc 20763074  T
Q  168 acaccgaaac-agccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatg 232  Q
    ||||||||||   ||||||| ||||||||||| |  ||||||| || ||  |||||||||||||||    
T  20763073 acaccgaaacgccccgttacgaccgtgacaaacatccgatacaaccataagactccgttacaaatg 20763008  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 20763007 - 20762963
Alignment:
Q  261 caacaccgttcataagaaaaaatagataatgagagactgtgatga 305  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  20763007 caacaccgttcataaggaaaaatagataatgagagactgtgatga 20762963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 1902 - 2059
Alignment:
Q  69 ttttaaatatgggtccgttaccgcaaaaacatccgcgacaaaaag-tataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatc 167  Q
    ||||||||| | |||||||||||| |||||  ||||||||||||| |||||||||||||||||||| ||||||||        |||||| ||||||||||    
T  1902 ttttaaatacgagtccgttaccgcgaaaacggccgcgacaaaaaggtataggtggccaccgataccgtttttacc--------gggtgatatgaaaaatc 1993  T
Q  168 acaccgaaaca-gccgttacaaccgtgacaaaaagtcgatacagccgtataactccgttacaaatg 232  Q
    |||||||||||  ||||||  ||||||||||| |  ||||||| |||||  |||||||||||||||    
T  1994 acaccgaaacaccccgttaagaccgtgacaaacatccgatacaaccgtaagactccgttacaaatg 2059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 282
Target Start/End: Original strand, 30569 - 30742
Alignment:
Q  108 aaaaagtataggtggccaccgataccatttttacctgttttcagggtgagatgaaaaatcacaccgaaacagccgttacaacc-gtgacaaaaagtcgat 206  Q
    |||| |||||||| ||||||  |||| ||||||||| |||||| ||||  | | ||||||||||||||||| |||||| || | ||||||||| | ||||    
T  30569 aaaaggtataggtagccaccattaccgtttttacctattttcaaggtggaaagtaaaatcacaccgaaaca-ccgttaaaaacagtgacaaaacgccgat 30667  T
Q  207 acagccgtataactccgttacaaatgtgacacaccattacgaaagcgaaaaacacaacaccgttcataagaaaaaa 282  Q
    ||| ||||| ||||||| ||| | || |||||||| ||| | ||||||| ||||||||||||||||||||||||||    
T  30668 acacccgtaaaactccgatacga-tgcgacacaccgttatggaagcgaagaacacaacaccgttcataagaaaaaa 30742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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