View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_22 (Length: 322)
Name: NF2501_low_22
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 819759 - 820052
Alignment:
| Q |
18 |
gttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaattgtgcttatctttgttgaactt |
117 |
Q |
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| T |
819759 |
gttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaattgtgcttatctttgttgaactt |
819858 |
T |
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| Q |
118 |
gtgtgtattttttggctatatcttctctgacacattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctttnnnnnnntgtc |
217 |
Q |
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| T |
819859 |
gtgtgtattttttggctatatcttctctgacatattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctttaaaaaaatgtc |
819958 |
T |
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| Q |
218 |
gtttattagttgtgaaataatgttnnnnnnntaggtatattttgatgacttttctcaatatttaatgatgttctttatttctctcttacccttt |
311 |
Q |
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| T |
819959 |
gtttattagttgtgaaataatgttaaaaaaataggtatattttgatgacttttctcaatatttaatgatgttctttatttctctcttacccttt |
820052 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 9277795 - 9277702
Alignment:
| Q |
111 |
tgaacttgtg-tgtattttttggctatatcttctctgacacattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctt |
205 |
Q |
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|||||||||| ||||| |||||||||| | |||| ||||||| ||||| | | |||||||| |||||||||||||||| | ||||||||||||| |
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| T |
9277795 |
tgaacttgtgatgtatcttttggctattt--tctccgacacatcttgtgctgagaagatagtctgctggtagtaatatattttattttgatttctt |
9277702 |
T |
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