View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_23 (Length: 310)
Name: NF2501_low_23
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5401000 - 5400950
Alignment:
| Q |
1 |
accctctgtaccaacgctaaaaaagacactaccatccacattcaaaacaac |
51 |
Q |
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| T |
5401000 |
accctctgtaccaacgctaaaaaagacactacaatccacattcaaaacaac |
5400950 |
T |
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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 5427984 - 5427936
Alignment:
| Q |
203 |
gaactgttatagttggcatacaatgacaaccatcatagttggcacaaat |
251 |
Q |
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|||||||| |||||||||||||| || ||||| |||||||||||||||| |
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| T |
5427984 |
gaactgttgtagttggcatacaaagaaaaccaccatagttggcacaaat |
5427936 |
T |
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