View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_24 (Length: 306)
Name: NF2501_low_24
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 27261142 - 27261384
Alignment:
| Q |
18 |
ggttgtagggtgcatgagaacttttactcggtgcatcttcacagagaaaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttcta |
117 |
Q |
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| T |
27261142 |
ggttgtagggtgcatgaaaacttttactcggtgcaccttcacagagaaaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttcta |
27261241 |
T |
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| Q |
118 |
tttgaaaaatgattgtccaattcctctcacttttgtactatgggcaccacattatcgagataatgcacatcccgaagattatagatgtatccatatgatg |
217 |
Q |
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| T |
27261242 |
tttaaaaaatgattgtccaattcctctcacttttgtactatgggcaccacattatcgagataatgtacatcctgaagattatagatgtatccatatgatg |
27261341 |
T |
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| Q |
218 |
attgtttataatgaactcagtcggatggcatttaatgaaataa |
260 |
Q |
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| T |
27261342 |
attgtttataatgaacttagtcgggtggcatttaatgaaataa |
27261384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 27265729 - 27265773
Alignment:
| Q |
252 |
atgaaataataggagatgatgacgtggtcattgtggaaacctttg |
296 |
Q |
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| T |
27265729 |
atgaaataataggagatgatgacgtggtcattgtggaaacctttg |
27265773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 21941401 - 21941471
Alignment:
| Q |
79 |
tctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcactt |
149 |
Q |
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| T |
21941401 |
tctaacacatgtgaatgaaaattattttatgatggtatatttgaagaatggttgtccaattcctctgactt |
21941471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 27546908 - 27546994
Alignment:
| Q |
62 |
agaaaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcact |
148 |
Q |
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| T |
27546908 |
agaaatcgaatgatgtgtctaactcatgtgaatgacaaccattttatgatggtgtatttgaagaatggttgtccaattcctcccact |
27546994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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