View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_25 (Length: 305)
Name: NF2501_low_25
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_25 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 3897249 - 3896961
Alignment:
| Q |
1 |
atcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897249 |
atcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgt |
3897150 |
T |
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| Q |
101 |
taatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttcctttaatttgtgatgaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3897149 |
taatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttccattaatttgtgatgaatg |
3897050 |
T |
|
| Q |
201 |
ttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaataatattgcatgtaattatatgtgtcggtgaatgaac |
289 |
Q |
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| T |
3897049 |
ttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaataatattgcatgtaattatatgtgtcggtgaatgaac |
3896961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 46283680 - 46283795
Alignment:
| Q |
1 |
atcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgt |
100 |
Q |
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||||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || | | |||| ||| | ||||||||| | |||||||||||| |
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| T |
46283680 |
atcctataagattgggtttggctctcaatttctctgttttctattacgaaattctcaatcaatctgacaaagcttgtgacatggccaaacaggtttgtgt |
46283779 |
T |
|
| Q |
101 |
taatccaatcttgttt |
116 |
Q |
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||||| ||||||||| |
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| T |
46283780 |
taatctgatcttgttt |
46283795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 4905 - 4615
Alignment:
| Q |
1 |
atcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4905 |
atcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgt |
4806 |
T |
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| Q |
101 |
taatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttcctttaatttgtgatgaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4805 |
taatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttccattaatttgtgatgaatg |
4706 |
T |
|
| Q |
201 |
ttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaataatatt--gcatgtaattatatgtgtcggtgaatgaac |
289 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
4705 |
ttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaataatattaagcatgtaattatatgtgtaggtgaatgaac |
4615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 39356450 - 39356413
Alignment:
| Q |
12 |
ttgggtttggctttgaatttctcggttttctattatga |
49 |
Q |
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|||||| |||||||||||||||| |||||||||||||| |
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| T |
39356450 |
ttgggtctggctttgaatttctcagttttctattatga |
39356413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 24806921 - 24806969
Alignment:
| Q |
201 |
ttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaat |
249 |
Q |
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|||||||| ||||||||||||||||||| ||||| | ||||||||||| |
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| T |
24806921 |
ttttctatcaagcacggacacgtcaacatggataaaattttgagaaaat |
24806969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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