View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_28 (Length: 285)
Name: NF2501_low_28
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_28 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 5128 - 5044
Alignment:
| Q |
13 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
97 |
Q |
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| T |
5128 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
5044 |
T |
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Target: scaffold0137; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 4953 - 4860
Alignment:
| Q |
191 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctctcaatttctctgttttctatta |
284 |
Q |
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| T |
4953 |
gttgtgattgtttgaaggatattgctgctgcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctatta |
4860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 3898797 - 3898713
Alignment:
| Q |
13 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
97 |
Q |
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| T |
3898797 |
caaaggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
3898713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 3897297 - 3897204
Alignment:
| Q |
191 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctctcaatttctctgttttctatta |
284 |
Q |
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| T |
3897297 |
gttgtgattgtttgaaggatattgctgcggcagatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctatta |
3897204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 46283646 - 46283726
Alignment:
| Q |
205 |
aaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctctcaatttctctgttttctattac |
285 |
Q |
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| T |
46283646 |
aaggatattgctgctgcggatcttccatcaactcatcctataagattgggtttggctctcaatttctctgttttctattac |
46283726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 46283490 - 46283571
Alignment:
| Q |
16 |
aggtatatggctgagtttaagattggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
97 |
Q |
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| T |
46283490 |
aggtatttggctgagtttaagattggtgatgagaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
46283571 |
T |
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