View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_29 (Length: 284)
Name: NF2501_low_29
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 24513558 - 24513819
Alignment:
| Q |
7 |
cagagatgaaagccatcccacagaagacagccttaacagattttttctgtccagcatactcaaaagccaatggcagcatttcatgaagggtcaaaaaagc |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24513558 |
cagacatgaaagccatcccacagaagacagccttaacagattttttctctccagcatactcaaaagccaatggcagcatttcatgaagggtcaaaaaagc |
24513657 |
T |
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| Q |
107 |
cataacaccaccaactgtaattataacagaataatcaacaaatatacattgcaaatcaaagtgccnnnnnnnnnnnnnnnnttattgagcaatgcaaacc |
206 |
Q |
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| T |
24513658 |
cataacaccaccaactgtaattataacagaataatcaacaaatatacattgcaaaacaaagtgccaaaaaataaaataaaattattgagcaatgcaaacc |
24513757 |
T |
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| Q |
207 |
tgatgccaacaaaccctcaagaatctcaggatttagactggtagggaatagacaggctacat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24513758 |
tgatgccaacaaaccctcaagaatctcaggatttagactggtagggaatagacaggctacat |
24513819 |
T |
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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 41946698 - 41946818
Alignment:
| Q |
7 |
cagagatgaaagccatcccacagaagacagccttaacagattttttctgtccagcatactcaaaagccaatggcagcatttcatgaagggtcaaaaaagc |
106 |
Q |
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|||| ||||||||||||||| | || |||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
41946698 |
cagacatgaaagccatcccaaaaaatacagcctttacagattgcttctgtccagcataatcaaaagccaacggcagcatttcatgaagagtcagaaaagc |
41946797 |
T |
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| Q |
107 |
cataacaccaccaactgtaat |
127 |
Q |
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|||||| |||||||||||||| |
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| T |
41946798 |
cataactccaccaactgtaat |
41946818 |
T |
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