View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_33 (Length: 253)
Name: NF2501_low_33
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2016361 - 2016141
Alignment:
| Q |
16 |
atatgaaaatgacaaaaaagataggaggagctaaaatgaaaaggctacgtaaataaaatccagtagagtcaacaatgcccttaaaacgaataaatattac |
115 |
Q |
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| T |
2016361 |
atatgaaaatgacaaaaaagataggaggagctaaaatgaaaaggctacgtaaataaaatccagtagagtcaacaatgcccttaaaacgaataaatattac |
2016262 |
T |
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| Q |
116 |
tagtggacattttgataataaaagccaacaaagtcctgggactacgaaggctttaggccaggtttgtgcgaaagtgaagattacatgtggcagagcccct |
215 |
Q |
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| T |
2016261 |
tagtggacattttgataataaaagccaacaaagtcctgggactacgaaggctttaggccaggtttgtgcgaaagtgaagattacatgtggcagagcccct |
2016162 |
T |
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| Q |
216 |
tggacacacagagaaagtttc |
236 |
Q |
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| T |
2016161 |
tggacacagagagaaagtttc |
2016141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 2013013 - 2012963
Alignment:
| Q |
186 |
aaagtgaagattacatgtggcagagccccttggacacacagagaaagtttc |
236 |
Q |
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| T |
2013013 |
aaagtgaagtttacatgtcgcagatccccttggacacaaagagaaagtttc |
2012963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 26248639 - 26248706
Alignment:
| Q |
20 |
gaaaatgacaaaaaagataggaggagctaaaatgaaaaggctacgtaaataaaatccagtagagtcaa |
87 |
Q |
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| T |
26248639 |
gaaaaggacaaaaatgctaggaggggctaagttgaaaaggctacataaataaattacagtagagtcaa |
26248706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 2019721 - 2019671
Alignment:
| Q |
186 |
aaagtgaagattacatgtggcagagccccttggacacacagagaaagtttc |
236 |
Q |
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| T |
2019721 |
aaagtgaagattacatgtcgcagagcccattggacacaaagataatgtttc |
2019671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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