View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_34 (Length: 250)
Name: NF2501_low_34
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 53426418 - 53426661
Alignment:
| Q |
7 |
tcgaagaaaatattgaagcactttctctcagaccacacccataagagcattctgtttatgcatcatttagtacttctctctgaataagttatccttagtc |
106 |
Q |
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| T |
53426418 |
tcgaagaaaatattgaagcactttctctcagaccacacccataagagcattctgtttatgcatcatttagtacttctctctgaataaattatccttagtc |
53426517 |
T |
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| Q |
107 |
ataatcatattttgaaataaccgccacgccaacactgccaccttcaattggcatttcaatatcaatttcacatgatatatcctcctcattacattaagaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426518 |
ataatcatattttgaaataaccgccacgccaacactgccaccttcaattggcatttcaatatcaatttcacatgatatatcctcctcattacattaagaa |
53426617 |
T |
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| Q |
207 |
gaatgcagcatacatctacatatattgtgcttatcaaaaactta |
250 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53426618 |
gaatgcaacatacatctacatatattgtgcttatcaaaaactta |
53426661 |
T |
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