View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_37 (Length: 242)
Name: NF2501_low_37
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_37 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3571849 - 3572085
Alignment:
| Q |
1 |
aacaaaaaattgatgnnnnnnnaagaatactgcacatgctaggctgcaagtatgattgtattatggtaataagcatggacataaagaatatgcaataagc |
100 |
Q |
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| T |
3571849 |
aacaaaaaattgatgttttttgaagaatactacacatgctaggcagcaagtatgattgtattatggtaataagcattgacataaagaatatgcaataagc |
3571948 |
T |
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| Q |
101 |
tgccaataggcctacattgactcaacatnnnnnnnnnttaaaccactcactctagtgcagctactcaacaacagatccgcagacccacatgagcaaaatc |
200 |
Q |
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| T |
3571949 |
tgccaataggcctgcattgactcaacat-aaaaaaaattaaac----cactctagtgcagctactcaacaacagatccgcagacccacatgagcaaaatc |
3572043 |
T |
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| Q |
201 |
gctttaaccgagtgagataaacgatgaaatacagttgagcac |
242 |
Q |
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| T |
3572044 |
gctttaaccaagtgagataaacgatgaaatacagttgagcac |
3572085 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 2646227 - 2646278
Alignment:
| Q |
23 |
aagaatactgcacatgctaggctgcaagtatgattgtattatggtaataagc |
74 |
Q |
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| T |
2646227 |
aagaatattgcacaggctaggcagcaagtatgattgtattatggtactaagc |
2646278 |
T |
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