View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_38 (Length: 239)
Name: NF2501_low_38
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 53597842 - 53597620
Alignment:
| Q |
17 |
atatttaagccaacagaagaaaccagacaatgagagcatatacaaggtatcaaagcagctttgttggaactgcatggcagagtcactagagtttttgttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
53597842 |
atatttaagccaacagaagaaaccagacaatgagagcatatacaaggtatcaaagcagctttgttggaactgcatgcaagagtcactagaatttttgttc |
53597743 |
T |
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| Q |
117 |
agacacaacttggtaagagcatcaaaatgggaacttccactgatgtgggattaccagcttgaacaatatgcaaggtggtgggctagtcaaagaaaaccag |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53597742 |
agacacaacttggtaagagcttcaaaatgggaacttccactgatgtgggattaccagcttgaacaatatgcaaggtggtgggctagtcaaagaaaaccag |
53597643 |
T |
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| Q |
217 |
attgcaaagtggaacattctttt |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
53597642 |
attgcaaagtggaacattctttt |
53597620 |
T |
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