View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_4 (Length: 576)
Name: NF2501_low_4
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 46870782 - 46871110
Alignment:
| Q |
20 |
aactacataacttgttaatcttttgcagtgtttggtttaactttgacatgtgttctgttccaaaatgttcagtgtcaacctaacaagtagttagttacat |
119 |
Q |
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| T |
46870782 |
aactacataacttgttaatcttttgcagtgtttggtttaactttgacatgtgttctgttccaaaatgttcagtgtcaacctaacaagtagttagttacat |
46870881 |
T |
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| Q |
120 |
agttgttgtgaactcaaattatttaactttcaaacacactactagatagattataattggctttagaaaaagaatagaagtagaacaaaacaaaataacc |
219 |
Q |
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| T |
46870882 |
agttgttgtgaactcaaattatttaactttcaaacacactactagatagattataattggctttagaaaaagaatagaagtagaacaaaacaaaataacc |
46870981 |
T |
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| Q |
220 |
taagattttaatgtttgtcttacttaacatatactataaagannnnnnnctacgaaggtttaacatatactgtaaagatacgaggtaaaattatatattt |
319 |
Q |
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| T |
46870982 |
taagattttaatgtttgccttacttaacatatactataaagatttttttctacgaaggtttaacatatactgtaaagatacgaggtaaagttatatattt |
46871081 |
T |
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| Q |
320 |
--catttgtatacttcagaaatatccttc |
346 |
Q |
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| T |
46871082 |
cacatgtgtatacttcagaaatatccttc |
46871110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 381 - 566
Target Start/End: Original strand, 46871140 - 46871325
Alignment:
| Q |
381 |
ttgatttcattttacttcattcaaaatctattcttttcttttatgaagaaaaaatttgtggtannnnnnncccacctaagttccctccattatttgagga |
480 |
Q |
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| T |
46871140 |
ttgatttcattttacttcattcaaaatctattcttttcttttatgaagaaaaaatttgtggtatttttttcccacctaagttccctccattatttgagga |
46871239 |
T |
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| Q |
481 |
atgtcgaccaaggccgttccaataattttcaacagttagtgaagtttaagacaaattttgaaagaaggttgctctatatgcctttg |
566 |
Q |
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| T |
46871240 |
atgtcgaccaaggccgttccaataattttcaacagttagtgaagtttaagacaaattttgaaagaaggttgctctatatgcctttg |
46871325 |
T |
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