View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_41 (Length: 235)
Name: NF2501_low_41
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4621917 - 4622139
Alignment:
| Q |
1 |
catatttttgtcaaataaagaatctggatatatcacattagattaatcagtcacatgcacgttttctaaagagaaaattcaattcaaaatttccaactat |
100 |
Q |
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| T |
4621917 |
catatttttgtcaaataaagaatctggatatatcacattagattaatcagtcacatgcacgttttctaaagagaaaattcaattcaaaatttccaactat |
4622016 |
T |
|
| Q |
101 |
caatttcctaatcctcattctcatcattcttattattatattcttctcactattatac-atcatcatgataaatg-nnnnnnnagggaatcatgataaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||| |
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| T |
4622017 |
caatttcctaatcctcattctcatcattcttattattatattcttctcactgttatactattatcatgataaatgtttttcttagggaatcatgataaat |
4622116 |
T |
|
| Q |
199 |
ggtttatttcatacgaatctaat |
221 |
Q |
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|||| |||||||||||||||||| |
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| T |
4622117 |
ggttaatttcatacgaatctaat |
4622139 |
T |
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