View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_43 (Length: 226)
Name: NF2501_low_43
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_43 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 1191042 - 1191259
Alignment:
| Q |
7 |
tcaggctcttggcatcacccatttctgcaggatggtagttgttcttcggtgaaaatgaagttcaagaaagaatcctgagtcnnnnnnntcagtcaatcaa |
106 |
Q |
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| T |
1191042 |
tcaggctcttggcatcacccatttctgcaggatggtagttgttcttcggtgaaaatgaagttcaagaaagaatcctgagtcaaaaaaatcagtcaatcaa |
1191141 |
T |
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| Q |
107 |
tttttcaaatatgtacttattattggcttcactaaaaatacacaaaaatttcaattctaataagttccaacatagccaaatgatatcaaaatgtcgatcc |
206 |
Q |
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| T |
1191142 |
tttttcaaatatgtacttattattggcttcactaaaaatacac--aaatttcaattctaataagttccaacatagccaaatgatatcaaaatgtcgatcc |
1191239 |
T |
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| Q |
207 |
ttcataattttaataaaatt |
226 |
Q |
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| T |
1191240 |
ttcataattttaataaaatt |
1191259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 154591 - 154808
Alignment:
| Q |
7 |
tcaggctcttggcatcacccatttctgcaggatggtagttgttcttcggtgaaaatgaagttcaagaaagaatcctgagtcnnnnnnntcagtcaatcaa |
106 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
154591 |
tcaggctcttagcatcacccatttctgcaggatggcagttgttcttttgtgaaaatgaaattcaagaaagaatcctgagtcaaaaaaatcagtcaatcaa |
154690 |
T |
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| Q |
107 |
tttttcaaatatgtacttattattggcttcactaaaaatacacaaaaatttcaattctaataagttccaacatagccaaatgatatcaaaatgtcgatcc |
206 |
Q |
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| T |
154691 |
tttttcaaatatgtacttattataggcttcactaaaaatacacaaa--tttcaattctaataagttccaacatagccaaatgatatcaagatgtcgatcc |
154788 |
T |
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| Q |
207 |
ttcataattttaataaaatt |
226 |
Q |
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||| |||||||||||||||| |
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| T |
154789 |
ttcgtaattttaataaaatt |
154808 |
T |
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