View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_6 (Length: 537)
Name: NF2501_low_6
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 172 - 520
Target Start/End: Original strand, 2976044 - 2976399
Alignment:
| Q |
172 |
gacgttgaatccaataccaactgtgacatctaacaaactcttctcatgttccatgagttaggaaaaacacatacatagatacatacataaactcaaacgc |
271 |
Q |
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| T |
2976044 |
gacgttgaatccaataccaactgtgacatctaacaaactcttctcatgttccatgagttaggaaaaacacatacata--------cacaaactcaaacgc |
2976135 |
T |
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| Q |
272 |
ttacgttg---------ttgttggtgttgtttcacaagaaaatttttccacctacttcaccgcaaattgcagttttttatagttaccatcatcaattcat |
362 |
Q |
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| T |
2976136 |
ttacgttgttgttgttgttgttggtgttgtttcacaagaaattttttccacctacttcaccgcaaattgcagttttttatagttaccatcatcaattcat |
2976235 |
T |
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| Q |
363 |
catcataaatttggcagtcagagtcacctaaatgacttcttcatttaagaccctcaacaaacaattccctcttctacctcctttccatcaccctcataaa |
462 |
Q |
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| T |
2976236 |
catcataaatttggcagtcagagtcacctaaatgacttcttcatttaagaccctcaacaaacaattccctcttctacctcctttccatcaccctcataaa |
2976335 |
T |
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| Q |
463 |
ttccctcatcacca------ttcttcttcttctattaattactcttacacccccatcttctctt |
520 |
Q |
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| T |
2976336 |
tttcctcatcaccattcttcttcttcttcttctattaattactcttacacccccatcttctctt |
2976399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 2975871 - 2976013
Alignment:
| Q |
13 |
atacttttcaataatgtgaatgtgatttgactaagnnnnnnnnn-tctttccccttacagtatacataaattaaaaaacagtggtgcaatgcgacaagac |
111 |
Q |
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| T |
2975871 |
atacttttcaataatgtgaatgtgatttgactaagaaaaaaaaaatctttccccttacagtgtacataaattaaaaaacagtggtgcaatgcgacaagac |
2975970 |
T |
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| Q |
112 |
attataattagtggtgcaaattgcatggcatggcatgttagac |
154 |
Q |
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| T |
2975971 |
attataattagtggtgcaaattgcatggcatggcatgttagac |
2976013 |
T |
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