View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_7 (Length: 502)
Name: NF2501_low_7
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 34695113 - 34695344
Alignment:
| Q |
19 |
gcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccatt |
118 |
Q |
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| T |
34695113 |
gcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccatt |
34695212 |
T |
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| Q |
119 |
gacatgagtgcacctgctgatattccattcctctttactggtgatcaatttcaaggtaataaatattcatttttataaagtgattgaacttaagtggtaa |
218 |
Q |
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| T |
34695213 |
gacatgagtgcacctgctgatattccattcctctttactggtgatcaatttcaaggtaataaatattaatttttataaagtgattgaacttaagtggtaa |
34695312 |
T |
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| Q |
219 |
ataatttcaattaaagatgaatatttgaaaac |
250 |
Q |
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| T |
34695313 |
ataatttcaattaaagatgaatatttgaaaac |
34695344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 248 - 488
Target Start/End: Original strand, 34697071 - 34697312
Alignment:
| Q |
248 |
aacaaactgatttaaatcctagtttgaacaannnnnnnatcaaactttacttatgtgtcaaactctaaatttcctatagtcccttcttaaaaaacagaag |
347 |
Q |
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| T |
34697071 |
aacaaactgatttaaatcctagttttaacaatttttttatcaaactttacttatgtgtcaaactctaaattacctatagtcccttcttaaaaaacagaag |
34697170 |
T |
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| Q |
348 |
gtttggacataatatatatcaatatttacatgtgtttgtgtgggcgcgtgtgcgcacacccagaatgt-acgcacggggtatggttatgttctataatat |
446 |
Q |
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| T |
34697171 |
gtttggacaaaatatatatcaatatttacatgtgtttgtgtgggcgcccgtgcgcacacccagaatttaaagcacggggtatggttatgttctataatat |
34697270 |
T |
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| Q |
447 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatg |
488 |
Q |
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| T |
34697271 |
ctcatggacgtgtgcaatgttcatggcttcatttggttgatg |
34697312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 34687191 - 34687341
Alignment:
| Q |
23 |
atgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctccggccattgaca |
122 |
Q |
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| T |
34687191 |
atgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatgat---tcaactgatcttgctcctctacctccggccattgaca |
34687287 |
T |
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| Q |
123 |
tgagtgcacctgctgatattccattcctctttactggtgatcaatttcaaggta |
176 |
Q |
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| T |
34687288 |
tgagtgcacctgttgatgttccattcctttttaccggtgatcaacttcaaggta |
34687341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 8285100 - 8285179
Alignment:
| Q |
32 |
caagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatcttgctcctctccctcc |
111 |
Q |
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| T |
8285100 |
caagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcc |
8285179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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