View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2501_low_9 (Length: 455)
Name: NF2501_low_9
Description: NF2501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2501_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 1539452 - 1539003
Alignment:
| Q |
11 |
atatgttgttactccctattaacaatttaaatactcattcttttatacagttttaaatagattattgcaaattgttgtgtccatattagtatgaatcaag |
110 |
Q |
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| T |
1539452 |
atatgttgttactccctattaacaatttaaatactcattcttttatacagttttaaatagattattgcaaattgttgtgtccatattagtatgaatcaag |
1539353 |
T |
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| Q |
111 |
acttttttatgtcaaaatataactccaaatatcaaatgttccaacaatttgcaacagttagatttttatataggaatttgaaacaatgttccaaaaaatt |
210 |
Q |
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| T |
1539352 |
acttttttatgtcaaaatataactccaaatgtcaaatgttccaacaatttgcaacagttagatttttatataggaattcgaaacaatgttccaacaaatt |
1539253 |
T |
|
| Q |
211 |
gttgtgttgattctctaatatgaatcattatgaatnnnnnnnttataggtggaagcatttccccaccttccccaccagctgctcatgcaccaggtgggac |
310 |
Q |
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| T |
1539252 |
gttgtgttgattctctaatatgaatcattatgaataaaaaaattataggtggaagcatttccccaccttccccaccagctgctcatgcaccaggtgggac |
1539153 |
T |
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| Q |
311 |
cactccatctacagcaccc---------------gcagccacaactccggcagaggcaccatcgaatgtcaagagtgcagcatcaacattgctccctatt |
395 |
Q |
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| T |
1539152 |
cactccatctacagcacccgcagccacaacaccggcagccacaactccggcagaggcaccatcgaatgtcaagagtgcagcatcaacattgctccctatt |
1539053 |
T |
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| Q |
396 |
tcagctggatccctcattgtttgccttttatctctattcctaggcctttg |
445 |
Q |
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| T |
1539052 |
tcagctggatccctcattgtttgccttttatctctattcttaggcctttg |
1539003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 342 - 445
Target Start/End: Complemental strand, 1535498 - 1535395
Alignment:
| Q |
342 |
ccggcagaggcaccatcgaatgtcaagagtgcagcatcaacattgctccctatttcagctggatccctcattgtttgccttttatctctattcctaggcc |
441 |
Q |
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||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||| |
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| T |
1535498 |
ccggcagccgcaccaccgagtggcaagagtgcagcatcaacattgctccctatttcagttggatcccttcttgtgtgccttttatctctattctcaggcc |
1535399 |
T |
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| Q |
442 |
tttg |
445 |
Q |
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|||| |
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| T |
1535398 |
tttg |
1535395 |
T |
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