View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2502_high_4 (Length: 343)
Name: NF2502_high_4
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2502_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 32687609 - 32687931
Alignment:
| Q |
6 |
caaaggtaactgaaagcactaagtttatcaaaagaggcaacttaaattttgaaagcttttttcttatcgaatttgtgtacggtctatcaactattcatat |
105 |
Q |
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| T |
32687609 |
caaaggtaactgaaagcactaagtttatcaaaagaggcaacttaaattttgaaagcttttttcttttcgaatttgtatacggtctatcaactattcatat |
32687708 |
T |
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| Q |
106 |
aaaaattgctctagcttaaaatgaaagctaatcaatgtttatttcttctgatcatttctatcatatctttgagataataataaatgttgttctatagaaa |
205 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32687709 |
aaaaattgctctagcctaaaatgaaagctaatcaatgtttatttcttctgatcatttctatcatatctttgagataataataaatgttgttctatagaaa |
32687808 |
T |
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| Q |
206 |
tggagttgatacagaagaagaaatctaccgtgtcacgtactatggcaaaggaagaatgccggtaagatatcttacttagacttcagacataggcacgttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32687809 |
tggagttgatacagaagaagaaatctaccgtgtcacgtactatggcaaaggaagaatgccggtaagatatcttacttagacttcagacataggcacgttg |
32687908 |
T |
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| Q |
306 |
ccttctgctttaatgattatcct |
328 |
Q |
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||||||||||||||||||||||| |
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| T |
32687909 |
ccttctgctttaatgattatcct |
32687931 |
T |
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