View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2502_high_7 (Length: 316)
Name: NF2502_high_7
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2502_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 14578885 - 14578632
Alignment:
| Q |
56 |
aaacttatactgcaaatctttcctttcaaacccagtctgaaaaactacttatatgagttacataatataaaaactattgtcttattaataagtttcaaag |
155 |
Q |
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| T |
14578885 |
aaacttatactgcaaatctttcctttcaaacccagtttgaaaaactacttatatgagttacataatataaaaactattgtcttattaataagtttcaaag |
14578786 |
T |
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| Q |
156 |
tgtagttgatactactgaaattatactaatccaaattcatgtatgacaccattcttcttcacattttcctttgaattttcaatagcctccaccttttctt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14578785 |
tgtagttgatactactgaaattatactaatccaaattcatgtatgacaccattcttcttcacattttcctttgaattttcaatagcctccaccttttctt |
14578686 |
T |
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| Q |
256 |
cctcttccttcagttgagcttcctcatcctcatcttttgcattttcctttgctt |
309 |
Q |
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| T |
14578685 |
cctcttccttcagttgagcttcctcatcctcatcttttgcattttcctttgctt |
14578632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 14578941 - 14578902
Alignment:
| Q |
19 |
gctatatcatgcataatccaaaatatgaaaacaattcaaa |
58 |
Q |
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| T |
14578941 |
gctatatcatgcataatccaaaatatgaaaacaattcaaa |
14578902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 2843056 - 2842996
Alignment:
| Q |
201 |
acaccattcttcttcacattttcctttgaattttcaatagcctccaccttttcttcctctt |
261 |
Q |
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| T |
2843056 |
acaccattctccttcacattttcctctaacttttcatcagccttaaccttttcttcctctt |
2842996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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