View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2502_low_1 (Length: 562)

Name: NF2502_low_1
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2502_low_1
NF2502_low_1
[»] chr8 (24 HSPs)
chr8 (342-545)||(29270364-29270567)
chr8 (246-306)||(5557817-5557877)
chr8 (249-306)||(5557754-5557811)
chr8 (248-311)||(5558018-5558081)
chr8 (248-306)||(5557885-5557943)
chr8 (248-306)||(5557951-5558010)
chr8 (248-307)||(25336666-25336725)
chr8 (249-306)||(5557688-5557745)
chr8 (249-298)||(25336472-25336521)
chr8 (248-308)||(3165864-3165924)
chr8 (246-302)||(20810339-20810395)
chr8 (248-307)||(3165998-3166057)
chr8 (248-307)||(3166065-3166124)
chr8 (248-299)||(20810409-20810460)
chr8 (248-307)||(25336599-25336658)
chr8 (248-306)||(26082099-26082157)
chr8 (248-299)||(3165806-3165857)
chr8 (268-307)||(25336552-25336591)
chr8 (254-301)||(26082037-26082084)
chr8 (26-93)||(29262782-29262846)
chr8 (248-308)||(3165931-3165990)
chr8 (264-294)||(21542084-21542114)
chr8 (264-300)||(4844047-4844083)
chr8 (264-300)||(21542145-21542181)
[»] chr6 (58 HSPs)
chr6 (26-248)||(27726036-27726274)
chr6 (374-548)||(27715092-27715264)
chr6 (324-510)||(27703375-27703567)
chr6 (354-518)||(27682419-27682583)
chr6 (34-248)||(27533088-27533322)
chr6 (44-248)||(27707117-27707341)
chr6 (26-195)||(27594511-27594696)
chr6 (39-248)||(27692356-27692586)
chr6 (27-207)||(27614019-27614218)
chr6 (420-500)||(26852086-26852166)
chr6 (246-311)||(34255454-34255519)
chr6 (427-500)||(26650051-26650124)
chr6 (427-500)||(26756019-26756092)
chr6 (246-306)||(34255591-34255651)
chr6 (248-306)||(29934616-29934674)
chr6 (248-306)||(34255525-34255583)
chr6 (427-500)||(28782487-28782560)
chr6 (427-500)||(28789861-28789934)
chr6 (246-311)||(29934545-29934610)
chr6 (249-306)||(34255657-34255714)
chr6 (246-306)||(26726293-26726353)
chr6 (248-304)||(28145145-28145201)
chr6 (248-307)||(26620446-26620505)
chr6 (248-307)||(26726425-26726484)
chr6 (421-496)||(25486821-25486898)
chr6 (320-374)||(26059489-26059543)
chr6 (320-374)||(26079459-26079513)
chr6 (246-308)||(28145277-28145339)
chr6 (246-307)||(5250007-5250068)
chr6 (427-500)||(26626660-26626733)
chr6 (427-500)||(26732637-26732710)
chr6 (246-306)||(26620380-26620440)
chr6 (246-306)||(26726359-26726419)
chr6 (248-308)||(28145212-28145272)
chr6 (421-496)||(25548422-25548497)
chr6 (246-308)||(26620314-26620374)
chr6 (246-308)||(26726227-26726287)
chr6 (248-307)||(28145078-28145137)
chr6 (433-500)||(28795879-28795946)
chr6 (338-422)||(27078974-27079057)
chr6 (248-307)||(6406594-6406653)
chr6 (248-307)||(31113150-31113209)
chr6 (248-308)||(5249939-5249999)
chr6 (421-500)||(27078781-27078861)
chr6 (249-308)||(5250075-5250134)
chr6 (426-500)||(26953131-26953205)
chr6 (421-474)||(26146443-26146496)
chr6 (334-373)||(26852258-26852297)
chr6 (265-308)||(33296078-33296121)
chr6 (248-307)||(6406525-6406586)
chr6 (26-70)||(26801273-26801317)
chr6 (102-144)||(26801234-26801276)
chr6 (514-548)||(27695297-27695331)
chr6 (264-298)||(31113227-31113261)
chr6 (421-462)||(26059392-26059433)
chr6 (421-462)||(26079362-26079403)
chr6 (431-496)||(26638921-26638986)
chr6 (431-496)||(26744887-26744952)
[»] scaffold0349 (2 HSPs)
scaffold0349 (26-248)||(4614-4853)
scaffold0349 (374-548)||(16680-16852)
[»] chr7 (33 HSPs)
chr7 (248-311)||(42785899-42785962)
chr7 (246-307)||(4341276-4341337)
chr7 (246-306)||(48477942-48478002)
chr7 (246-306)||(48478270-48478330)
chr7 (248-311)||(48478338-48478401)
chr7 (249-306)||(48478207-48478264)
chr7 (246-306)||(48478008-48478068)
chr7 (246-306)||(48478074-48478134)
chr7 (248-306)||(4341212-4341270)
chr7 (246-308)||(4341409-4341471)
chr7 (246-306)||(4341343-4341403)
chr7 (249-308)||(3078570-3078629)
chr7 (248-306)||(42785970-42786028)
chr7 (249-302)||(34456334-34456387)
chr7 (249-301)||(34456401-34456453)
chr7 (248-307)||(21958553-21958612)
chr7 (248-307)||(34456462-34456521)
chr7 (248-302)||(21958491-21958545)
chr7 (246-306)||(48478140-48478198)
chr7 (248-308)||(3081329-3081388)
chr7 (248-307)||(15695443-15695502)
chr7 (248-307)||(15702423-15702482)
chr7 (248-304)||(21958422-21958478)
chr7 (246-308)||(3078503-3078565)
chr7 (250-308)||(3078719-3078777)
chr7 (250-308)||(3081124-3081182)
chr7 (248-302)||(33615957-33616011)
chr7 (264-308)||(3078650-3078694)
chr7 (248-308)||(3081191-3081251)
chr7 (248-292)||(15695391-15695435)
chr7 (248-292)||(15702371-15702415)
chr7 (248-308)||(3081260-3081320)
chr7 (248-307)||(3081395-3081454)
[»] chr5 (6 HSPs)
chr5 (248-311)||(41528638-41528701)
chr5 (248-306)||(41528506-41528564)
chr5 (248-306)||(41528572-41528630)
chr5 (249-306)||(41528441-41528498)
chr5 (257-309)||(37368915-37368967)
chr5 (246-309)||(37368983-37369046)
[»] chr2 (14 HSPs)
chr2 (246-311)||(2743312-2743377)
chr2 (246-306)||(2743383-2743443)
chr2 (246-306)||(2743449-2743509)
chr2 (248-307)||(31314981-31315040)
chr2 (248-306)||(2743515-2743573)
chr2 (254-307)||(31347083-31347136)
chr2 (248-307)||(31346830-31346889)
chr2 (249-307)||(31315049-31315107)
chr2 (249-307)||(31315119-31315177)
chr2 (249-307)||(31315187-31315245)
chr2 (249-307)||(31346949-31347007)
chr2 (249-307)||(31347016-31347074)
chr2 (248-301)||(11951280-11951333)
chr2 (268-302)||(31346901-31346935)
[»] chr4 (39 HSPs)
chr4 (246-306)||(5599911-5599971)
chr4 (248-311)||(5599979-5600042)
chr4 (249-306)||(5599848-5599905)
chr4 (246-307)||(13713302-13713363)
chr4 (248-306)||(5909058-5909116)
chr4 (248-306)||(14190483-14190541)
chr4 (249-307)||(31663308-31663366)
chr4 (246-307)||(1506106-1506167)
chr4 (246-306)||(1506173-1506233)
chr4 (248-308)||(4852635-4852695)
chr4 (248-307)||(1505975-1506034)
chr4 (249-307)||(13713172-13713230)
chr4 (249-307)||(31663376-31663434)
chr4 (249-306)||(5599782-5599839)
chr4 (246-299)||(5909122-5909175)
chr4 (246-306)||(1506040-1506100)
chr4 (248-308)||(4852566-4852626)
chr4 (248-307)||(5578448-5578507)
chr4 (248-307)||(13713104-13713163)
chr4 (248-307)||(31663577-31663636)
chr4 (246-308)||(1506239-1506301)
chr4 (248-306)||(13702611-13702669)
chr4 (248-308)||(14190549-14190609)
chr4 (264-307)||(31663443-31663486)
chr4 (248-307)||(31663510-31663569)
chr4 (246-308)||(13713369-13713431)
chr4 (246-299)||(5578260-5578313)
chr4 (249-306)||(13713239-13713296)
chr4 (248-303)||(5578322-5578377)
chr4 (248-308)||(6735379-6735439)
chr4 (249-308)||(31663238-31663297)
chr4 (246-308)||(5578182-5578246)
chr4 (264-299)||(4852721-4852756)
chr4 (248-308)||(6735314-6735371)
chr4 (427-496)||(18652126-18652195)
chr4 (427-496)||(18676184-18676253)
chr4 (427-496)||(18686224-18686293)
chr4 (427-496)||(18720714-18720783)
chr4 (427-496)||(18728150-18728219)
[»] chr3 (30 HSPs)
chr3 (249-307)||(18111575-18111633)
chr3 (249-307)||(28034793-28034851)
chr3 (246-298)||(14521046-14521098)
chr3 (248-307)||(5835618-5835677)
chr3 (248-307)||(5938854-5938913)
chr3 (248-307)||(5938921-5938980)
chr3 (248-307)||(18111440-18111499)
chr3 (249-307)||(5938989-5939047)
chr3 (248-306)||(14521104-14521162)
chr3 (246-307)||(19384201-19384262)
chr3 (248-307)||(5938787-5938846)
chr3 (248-307)||(18111507-18111566)
chr3 (246-299)||(28034657-28034710)
chr3 (248-305)||(29897111-29897168)
chr3 (246-306)||(19384087-19384147)
chr3 (248-300)||(29897056-29897108)
chr3 (248-307)||(5938720-5938779)
chr3 (248-307)||(19441052-19441111)
chr3 (248-299)||(19441119-19441170)
chr3 (248-307)||(28034726-28034785)
chr3 (249-307)||(2746780-2746838)
chr3 (248-302)||(19479989-19480043)
chr3 (246-291)||(19384330-19384375)
chr3 (249-309)||(45227290-45227351)
chr3 (265-307)||(19384282-19384324)
chr3 (248-308)||(29897166-29897226)
chr3 (259-306)||(19384148-19384195)
chr3 (249-308)||(19480050-19480110)
chr3 (249-298)||(45227234-45227283)
chr3 (264-300)||(19480125-19480161)
[»] scaffold0419 (1 HSPs)
scaffold0419 (427-500)||(11005-11078)
[»] scaffold0277 (2 HSPs)
scaffold0277 (427-500)||(10265-10338)
scaffold0277 (427-500)||(1305-1378)
[»] chr1 (20 HSPs)
chr1 (248-307)||(22207896-22207955)
chr1 (246-303)||(51844412-51844469)
chr1 (248-308)||(14114754-14114814)
chr1 (248-300)||(22208030-22208082)
chr1 (249-308)||(15088567-15088626)
chr1 (249-308)||(22207692-22207751)
chr1 (248-307)||(22207760-22207819)
chr1 (249-308)||(22207828-22207887)
chr1 (249-308)||(22211175-22211234)
chr1 (249-299)||(22208098-22208148)
chr1 (249-308)||(22207964-22208023)
chr1 (248-303)||(51844347-51844402)
chr1 (248-302)||(15088633-15088687)
chr1 (249-307)||(22207625-22207683)
chr1 (248-302)||(22211241-22211295)
chr1 (248-308)||(14114685-14114745)
chr1 (248-308)||(14114823-14114883)
chr1 (248-308)||(14114894-14114954)
chr1 (246-300)||(51844479-51844533)
chr1 (427-500)||(26139534-26139607)
[»] scaffold0046 (3 HSPs)
scaffold0046 (248-299)||(90477-90528)
scaffold0046 (248-305)||(90544-90601)
scaffold0046 (248-299)||(90613-90663)
[»] scaffold0060 (2 HSPs)
scaffold0060 (248-300)||(40001-40053)
scaffold0060 (249-299)||(39935-39985)
[»] scaffold0043 (3 HSPs)
scaffold0043 (248-308)||(69695-69755)
scaffold0043 (248-307)||(69830-69889)
scaffold0043 (248-299)||(69771-69822)
[»] scaffold0927 (3 HSPs)
scaffold0927 (248-299)||(3626-3677)
scaffold0927 (249-307)||(3560-3618)
scaffold0927 (248-292)||(3693-3737)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 342 - 545
Target Start/End: Original strand, 29270364 - 29270567
Alignment:
Q  342 acctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaact 441  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaact 29270463  T
Q  442 ccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtattatttctataattgagataaggatctttgaataccacattct 541  Q
    || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  29270464 cccacttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataattgagataaggatctgtgaataccacattct 29270563  T
Q  542 cctc 545  Q
    ||||    
T  29270564 cctc 29270567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 5557817 - 5557877
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5557817 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5557877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 5557754 - 5557811
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5557754 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5557811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 5558018 - 5558081
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5558018 gttactatgagtcgttcctcatcggctacattatctcttcgttgtagcaaacggagtttttatc 5558081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 5557885 - 5557943
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5557885 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagagttt 5557943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 5557951 - 5558010
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctc-ttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5557951 gttactatgagccgttcctcataggctacattatctctttcgttgtagcaaacggagttt 5558010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 25336666 - 25336725
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  25336666 gttactatgagccgtacctcataggctacattatcttttcgttgtagcaaacggagtttt 25336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 5557688 - 5557745
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  5557688 ttactatgagctgtaccttataggctacattatctcttcgttgtagcaaacggagttt 5557745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 25336472 - 25336521
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 298  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25336472 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 25336521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 3165924 - 3165864
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  3165924 gttactatgagacgtacctcataagctacattatctcttcgttgtagcaaacagagttttt 3165864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 20810395 - 20810339
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    |||||||||||| || | |||||||||||||||||||||||||||||||||||||||    
T  20810395 tcgttactatgaaccatacctcataggctacattatctcttcgttgtagcaaacgga 20810339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 3166057 - 3165998
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  3166057 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaatggaatttt 3165998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 3166124 - 3166065
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||    
T  3166124 gttactatgagccgtaccttataggctacattatctcttcgttgtagcaagcggtgtttt 3166065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 20810460 - 20810409
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  20810460 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 20810409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 25336599 - 25336658
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||    
T  25336599 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 25336658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 26082099 - 26082157
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||    
T  26082099 gttaatatgagtcgtacctcataggctacattatctctccgttgtagcaaacggagttt 26082157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 3165857 - 3165806
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  3165857 gttactatgagacgtacctcataagctacattatctcttcgttgtagcaaac 3165806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 25336552 - 25336591
Alignment:
Q  268 ataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25336552 ataggctacattatctcttcgttgtagcaaacggagtttt 25336591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 26082037 - 26082084
Alignment:
Q  254 atgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 301  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26082037 atgagccgtacctcataggctacattatcacttcgttgtagcaaacgg 26082084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 29262782 - 29262846
Alignment:
Q  26 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaac 93  Q
    |||||||||||||||||||||||   ||||||||| |||||||||||||||| ||| |||||| ||||    
T  29262782 aaataaacaaaatgaagctccat---accatcaagttacattttggttacttttaaccaaagataaac 29262846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 3165990 - 3165931
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| |||||||||| ||||||||    
T  3165990 gttactatgagtcgtacctcataggctgcattatctcttcg-tgtagcaaacagagttttt 3165931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 21542114 - 21542084
Alignment:
Q  264 cctcataggctacattatctcttcgttgtag 294  Q
    |||||||||||||||||||||||||||||||    
T  21542114 cctcataggctacattatctcttcgttgtag 21542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 4844083 - 4844047
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaacg 300  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  4844083 cctcataggctacattatctattcgttgtaacaaacg 4844047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 21542181 - 21542145
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaacg 300  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  21542181 cctcataagctacattatctctttgttgtagcaaacg 21542145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 27726036 - 27726274
Alignment:
Q  26 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacgaggaaaatttgcatttcaaatatcatcaaat 125  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  27726036 aaataaacaaaatgaagctccattacaccatcaagatgcattttggttacttctaaccaaagaaaaacaaggaaaatttgcatttcaaatatcatcaaat 27726135  T
Q  126 gacatgttaattgagt----------------ctctgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttc 209  Q
    ||||||||||||||||                || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27726136 gacatgttaattgagtcttacatttgctaatactttgcttccaacagtagtagtatcaacaggacctggattccgtgcattaataaaagtccatagtttc 27726235  T
Q  210 aactttcatgcagttgttaatctcggccctttgtgatcg 248  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27726236 aactttcatgcagttgttaatctcggccctttgttatcg 27726274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 374 - 548
Target Start/End: Original strand, 27715092 - 27715264
Alignment:
Q  374 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagagg 473  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagagg 27715191  T
Q  474 aggcacaaattgtgacaatgaagtattatttctataattgagataaggatctttgaataccacattctcctcctc 548  Q
    |||| |||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||    
T  27715192 aggctcaaattgtgataatgaagtattattgc--taatttagataaggatctttgaataccacattctcctcctc 27715264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 324 - 510
Target Start/End: Original strand, 27703375 - 27703567
Alignment:
Q  324 cgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||    
T  27703375 cgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcc 27703474  T
Q  424 ------tcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtattatttctataa 510  Q
          |||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  27703475 tcctcttcctctgtctctgaaactcccatttccaccgatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataa 27703567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 354 - 518
Target Start/End: Complemental strand, 27682583 - 27682419
Alignment:
Q  354 gaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccacc 453  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccacc 27682484  T
Q  454 aatctttgcttttttagaggaggcacaaattgtgacaatgaagtattatttctataattgagata 518  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||| || | |||||||||    
T  27682483 aatctttgcttttttagaggaggctcaaattgtgataatgaagtattattgctctgattgagata 27682419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 27533088 - 27533322
Alignment:
Q  34 aaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacga---ggaaaatttgcatttcaaatatcatcaaatgacat 130  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||||||||||||  |||||    
T  27533088 aaaaagaagctccattacaccatcaggatacattttggttacttctaaccaaagaaaaacaaaatggaaaatttgcatttcaaatatcatcaatagacat 27533187  T
Q  131 gttaattgagtctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaact 213  Q
    ||||||||||||||                 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27533188 gttaattgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacgggacccggattccgtgcattaataaaagtccatagtttcaact 27533287  T
Q  214 ttcatgcagttgttaatctcggccctttgtgatcg 248  Q
    |||||||||||||||||||||||||||||| ||||    
T  27533288 ttcatgcagttgttaatctcggccctttgttatcg 27533322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 44 - 248
Target Start/End: Original strand, 27707117 - 27707341
Alignment:
Q  44 tccattacaccatcaagatacattttggttacttctaaacaaagaaaaacga---ggaaaatttgcatttcaaatatcatcaaatgacatgttaattgag 140  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||    
T  27707117 tccattacaccatcaggatacattttggttacttctaaccaaagaaaaacaaaaaggaaaatttgcatttcaaatatcatcaaatgacatgttaattgag 27707216  T
Q  141 tctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttcatgcagt 223  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27707217 tctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttcatgcaat 27707316  T
Q  224 tgttaatctcggccctttgtgatcg 248  Q
     ||||| |||  |||||||||||||    
T  27707317 cgttaaactccaccctttgtgatcg 27707341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 27594511 - 27594696
Alignment:
Q  26 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacgaggaaaatttgcatttcaaatatcatcaaat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  27594511 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaccaaagaaaaataaggaaaatttgcatttcaaatatcatcaaat 27594610  T
Q  126 gacatgttaattgagtctc----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataa 195  Q
    |||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27594611 gacatgttaattgagtctcacatttgctttaactttgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataa 27594696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 39 - 248
Target Start/End: Original strand, 27692356 - 27692586
Alignment:
Q  39 gaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaacga---ggaaaattt-gcatttcaaatatcatcaaatgacatgtta 134  Q
    |||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |   ||||||||| ||||||||||||||||||||||||||||||    
T  27692356 gaagctccattacaccatgaggatacattttggttacttctaaccaaagaaaaacaaaaaggaaaattttgcatttcaaatatcatcaaatgacatgtta 27692455  T
Q  135 attgagtctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttca 217  Q
    ||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692456 attgagtctcacatttgatttaacttgtgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtttcaactttca 27692555  T
Q  218 tgcagttgttaatctcggccctttgtgatcg 248  Q
    |||| | ||||| |||  |||||||||||||    
T  27692556 tgcaatcgttaaactccaccctttgtgatcg 27692586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 27614019 - 27614218
Alignment:
Q  27 aataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaac--gaggaaaatttgcatttcaaatatcatcaaa 124  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||   ||| |||||| |||||||||||||||||||    
T  27614019 aataaacaaaatgaagcttcattacaccatcaagatacattttggttacttctaaccaaagaaaaacaaaaggcaaatttacatttcaaatatcatcaaa 27614118  T
Q  125 tgacatgttaattgagtctc-----------------tgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagtt 207  Q
    ||||||||||||||||||||                 ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  27614119 tgacatgttaattgagtctcacatttgctttaacttgtgcttccaacactagtagtatccgcaggacccggattccgtgcattaataaaagtccatagtt 27614218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 26852166 - 26852086
Alignment:
Q  420 atcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  26852166 atcctcctctgtctctgaaactctaacttccatcaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 26852086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 34255519 - 34255454
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34255519 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagattttatc 34255454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 26650124 - 26650051
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26650124 tctgtctttgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataataaagtatt 26650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 26756092 - 26756019
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26756092 tctgtctttgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataataaagtatt 26756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 34255651 - 34255591
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34255651 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacagagttt 34255591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 29934674 - 29934616
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29934674 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 29934616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 34255583 - 34255525
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34255583 gttactttgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 34255525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 28782560 - 28782487
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  28782560 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28782487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 28789934 - 28789861
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  28789934 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 29934610 - 29934545
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  29934610 tcgttactatgagcggttcctcataggctacattatctcttcgttgtagcaaatggagattttatc 29934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 34255714 - 34255657
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34255714 ttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaacggagttt 34255657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 26726353 - 26726293
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26726353 tcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagttt 26726293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 28145145 - 28145201
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagt 304  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28145145 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagt 28145201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 26620505 - 26620446
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26620505 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 26620446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 26726484 - 26726425
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26726484 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 26726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 25486898 - 25486821
Alignment:
Q  421 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcac--aaattgtgacaatgaag 496  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  25486898 tcctcccctttctctgaaactcccacttccaccaatctttgcttttttagaggaggcacataaattgtgataatgaag 25486821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 26059543 - 26059489
Alignment:
Q  320 catccgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26059543 catccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26059489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 26079513 - 26079459
Alignment:
Q  320 catccgtgttgctttttgatgcacctagactaaggaatgtaccccatgtctttct 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26079513 catccgtgttgctttttgatgcacctagactaaggaatgtaccccaagtctttct 26079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 28145277 - 28145339
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  28145277 tcgttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacggagatttt 28145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 5250068 - 5250007
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||    
T  5250068 tcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaatagagtttt 5250007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 26626733 - 26626660
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  26626733 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtatt 26626660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 26732710 - 26732637
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  26732710 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtatt 26732637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 26620440 - 26620380
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  26620440 tcgttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaagttt 26620380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 26726419 - 26726359
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  26726419 tcgttactataagccgtacctcataggctacattatctcttcgttgtagcaaacgaagttt 26726359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 28145212 - 28145272
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  28145212 gttactatgagccgtacatcataggctacattatctcttcgttgtagcaaacggagatttt 28145272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 25548497 - 25548422
Alignment:
Q  421 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| | |||||||    
T  25548497 tcctcccctttctctgaaactcccacttccaccaatctttgctttttttgaggaggcataaattgtaataatgaag 25548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 26620374 - 26620314
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  26620374 tcgttactatgagccgtacctca--ggctacattatctcttcgttgtagcaaacggagttttt 26620314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 26726287 - 26726227
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  26726287 tcgttactatgagccgtacctca--ggctacattatctcttcgttgtagcaaacggagttttt 26726227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 28145078 - 28145137
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  28145078 gttactatgagctgtacctcataggctacattatctctttgttgtagcaaacggagtttt 28145137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 433 - 500
Target Start/End: Complemental strand, 28795946 - 28795879
Alignment:
Q  433 tctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  28795946 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 27079057 - 27078974
Alignment:
Q  338 atgcacctagactaaggaatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 422  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079057 atgcacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 6406594 - 6406653
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  6406594 gttattatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 6406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31113209 - 31113150
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||    
T  31113209 gttactatgagctatacctcataggctacattatctcttcgttgtagcaaacagagtttt 31113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 5249999 - 5249939
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||| || |||||    
T  5249999 gttactatgagccgtacctcatacactacattatctcttcgttgtagcaaacagaattttt 5249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 27078861 - 27078781
Alignment:
Q  421 tcctcctctgtctctgaaactccaacttccaccaatctttgc-ttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    |||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||  |||| ||||| || ||||||||    
T  27078861 tcctcctctgtctcggaaactcccacttccaccaatccttgctttttttagaggaggttcaaactgtgataacgaagtatt 27078781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 5250134 - 5250075
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||  || |||||||||||||||||| |||||||||||||||| |||||||||    
T  5250134 ttactatgagttgtacctcataggctacattatttcttcgttgtagcaaatggagttttt 5250075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 26953205 - 26953131
Alignment:
Q  426 ctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    |||||||||||||||||| ||||| || ||||| |||||||| ||||||||| ||||||| || ||| |||||||    
T  26953205 ctctgtctctgaaactcccacttcaacaaatctatgctttttcagaggaggctcaaattgcgataataaagtatt 26953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 26146496 - 26146443
Alignment:
Q  421 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagagga 474  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||| |||||    
T  26146496 tcctcccctttctctgaaactcccacttccaccaatctttgctttttttgagga 26146443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 373
Target Start/End: Complemental strand, 26852297 - 26852258
Alignment:
Q  334 tttgatgcacctagactaaggaatgtaccccatgtctttc 373  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26852297 tttgatgcacctagactaaggaatgtaccccaagtctttc 26852258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 33296121 - 33296078
Alignment:
Q  265 ctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  33296121 ctcataggctacattatctcttcgttgtagcaaactgatttttt 33296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 6406525 - 6406586
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttg--tagcaaacggagtttt 307  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||  ||||||||||| ||||    
T  6406525 gttactatgagccgtacctcataggctacattatttcttcattgtatagcaaacggattttt 6406586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 26801317 - 26801273
Alignment:
Q  26 aaataaacaaaatgaagctccattacaccatcaagatacattttg 70  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||    
T  26801317 aaataaataaaatgaagctccattacaccactaagatacattttg 26801273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 26801276 - 26801234
Alignment:
Q  102 tttgcatttcaaatatcatcaaatgacatgttaattgagtctc 144  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  26801276 tttgcatttcaaatatcatcaaatgacatattatttgaatctc 26801234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Original strand, 27695297 - 27695331
Alignment:
Q  514 agataaggatctttgaataccacattctcctcctc 548  Q
    |||||||||||| ||||||||||||||||||||||    
T  27695297 agataaggatctgtgaataccacattctcctcctc 27695331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 31113261 - 31113227
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaa 298  Q
    ||||||| |||||||||||||||||||||||||||    
T  31113261 cctcataagctacattatctcttcgttgtagcaaa 31113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 26059433 - 26059392
Alignment:
Q  421 tcctcctctgtctctgaaactccaacttccaccaatctttgc 462  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  26059433 tcctcccctttctctgaaactcccacttccaccaatctttgc 26059392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 462
Target Start/End: Complemental strand, 26079403 - 26079362
Alignment:
Q  421 tcctcctctgtctctgaaactccaacttccaccaatctttgc 462  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  26079403 tcctcccctttctctgaaactcccacttccaccaatctttgc 26079362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 496
Target Start/End: Complemental strand, 26638986 - 26638921
Alignment:
Q  431 tctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||| ||||||| ||| | ||||||||||||||||| | ||||| | |||||||||| |||||||    
T  26638986 tctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaag 26638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 496
Target Start/End: Complemental strand, 26744952 - 26744887
Alignment:
Q  431 tctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||| ||||||| ||| | ||||||||||||||||| | ||||| | |||||||||| |||||||    
T  26744952 tctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaag 26744887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 4614 - 4853
Alignment:
Q  26 aaataaacaaaatgaagctccattacaccatcaagatacattttggttacttctaaacaaagaaaaac-gaggaaaatttgcatttcaaatatcatcaaa 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||    
T  4614 aaataaacaaaatgaagctccattacaccatcaagatgcattttggttacttctaaccaaagaaaaacaaaggaaaatttgcatttcaaatatcatcaaa 4713  T
Q  125 tgacatgttaattgagt----------------ctctgcttccaacagtagtagtatcaacaggacccggattccgtgcattaataaaagtccatagttt 208  Q
    |||||||||||||||||                || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4714 tgacatgttaattgagtcttacatttgctaatactttgcttccaacagtagtagtatcaacaggacctggattccgtgcattaataaaagtccatagttt 4813  T
Q  209 caactttcatgcagttgttaatctcggccctttgtgatcg 248  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4814 caactttcatgcagttgttaatctcggccctttgttatcg 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 374 - 548
Target Start/End: Complemental strand, 16852 - 16680
Alignment:
Q  374 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagagg 473  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagagg 16753  T
Q  474 aggcacaaattgtgacaatgaagtattatttctataattgagataaggatctttgaataccacattctcctcctc 548  Q
    |||| |||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||    
T  16752 aggctcaaattgtgataatgaagtattattgc--taatttagataaggatctttgaataccacattctcctcctc 16680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 42785962 - 42785899
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42785962 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 42785899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 4341276 - 4341337
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4341276 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 4341337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48477942 - 48478002
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48477942 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48478270 - 48478330
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478270 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 48478338 - 48478401
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48478338 gttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacggagtttttatc 48478401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 48478207 - 48478264
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478207 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48478008 - 48478068
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478008 tcgttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48478074 - 48478134
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48478074 tcgttactatgacccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 48478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 4341212 - 4341270
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4341212 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 4341270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 4341409 - 4341471
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  4341409 tcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagatttt 4341471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 4341343 - 4341403
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  4341343 tcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggagttt 4341403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 3078629 - 3078570
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3078629 ttactatgagccgtacctcataggctacattatctattcgttgtagcaaacggagttttt 3078570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 42786028 - 42785970
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42786028 gttactatcagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 42785970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 34456387 - 34456334
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34456387 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgga 34456334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 34456453 - 34456401
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 301  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34456453 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 34456401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 21958612 - 21958553
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  21958612 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 21958553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 34456521 - 34456462
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  34456521 gttactatgagccgtacttcatagactacattatctcttcgttgtagcaaacggagtttt 34456462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 21958545 - 21958491
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  21958545 gttactatgagccatacctcataggctacattatctcttcgttgtagcaaacgga 21958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48478140 - 48478198
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  48478140 tcgttactatgagccgttcctcgtaggctacattatctc--cgttgtagcaaacggagttt 48478198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 3081329 - 3081388
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3081329 gttactatgagtcgtacctcataggctacattatct-ttcgttgtagcaaacggagttttt 3081388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 15695502 - 15695443
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  15695502 gttactataagccttacctcataggctacattatctcttagttgtagcaaacggagtttt 15695443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 15702482 - 15702423
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  15702482 gttactataagccttacctcataggctacattatctcttagttgtagcaaacggagtttt 15702423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 21958478 - 21958422
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagt 304  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||    
T  21958478 gttactatgagccgtacctcataggttacattatctctttgttttagcaaacggagt 21958422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 3078565 - 3078503
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||| |||||  |||||||    
T  3078565 tcgttactatgagtcgtacctcatagactacattatctcttcgttgtaacaaacaaagttttt 3078503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 308
Target Start/End: Complemental strand, 3078777 - 3078719
Alignment:
Q  250 tactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||||  |||||||    
T  3078777 tactatgagccgtacctcataagctacgttatctcttcgttgtagcaaacaaagttttt 3078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 3081124 - 3081182
Alignment:
Q  250 tactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||||||  ||||||||    
T  3081124 tactatgagtcgtacctcataggctacgttatctcttcgttgtagcaaatagagttttt 3081182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 33616011 - 33615957
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    ||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  33616011 gttaccatgagccgtacctcatagactacattgtctcttcgttgtagcaaacgga 33615957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 3078694 - 3078650
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||    
T  3078694 cctcataggctacattatctcatcgttgtagcaaacagagttttt 3078650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 3081191 - 3081251
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||  |||||||    
T  3081191 gttactatgagtcgtacctcataggctgcattatctcatcgttgtagcaaacaaagttttt 3081251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 15695435 - 15695391
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgt 292  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  15695435 gttactatgagctgtacctcataggctacattatctcttcgttgt 15695391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 15702415 - 15702371
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgt 292  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  15702415 gttactatgagctgtacctcataggctacattatctcttcgttgt 15702371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 3081260 - 3081320
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| || |||||||| ||||||||| || ||||||||||| ||||||||    
T  3081260 gttactatgagtcgtaccccataggctgcattatctcatcattgtagcaaacagagttttt 3081320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 3081395 - 3081454
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||| ||||||||||||||| ||||| |||||| | ||||||    
T  3081395 gttactatgagtcgtacctcattggctacattatctctccgttgcagcaaatgaagtttt 3081454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 41528638 - 41528701
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528638 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 41528701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 41528506 - 41528564
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528506 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 41528564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 41528572 - 41528630
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41528572 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 41528630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 41528441 - 41528498
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41528441 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 41528498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 37368967 - 37368915
Alignment:
Q  257 agccgttcctcataggctacattatctcttcgttgtagcaaacggagttttta 309  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  37368967 agccgtacctcataggctacattatctcttcgttgtagcaaacggatttttta 37368915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 37369046 - 37368983
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttta 309  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  37369046 tcgttactatgagtcgtacctcataggctacattatctctttgttgtagtaaacggatttttta 37368983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 2743377 - 2743312
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2743377 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagattttatc 2743312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 2743443 - 2743383
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2743443 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 2743383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 2743509 - 2743449
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2743509 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 2743449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 31314981 - 31315040
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31314981 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31315040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 2743573 - 2743515
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2743573 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 2743515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 31347136 - 31347083
Alignment:
Q  254 atgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31347136 atgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31347083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31346889 - 31346830
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31346889 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31346830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 31315049 - 31315107
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31315049 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 31315119 - 31315177
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||    
T  31315119 ttactatgagcagtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31315177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 31315187 - 31315245
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||    
T  31315187 ttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggattttt 31315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 31347007 - 31346949
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  31347007 ttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagtttt 31346949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 31347074 - 31347016
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  31347074 ttactatgagccgtatctcatatgctacattatctcttcgttgtagcaaacggagtttt 31347016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 11951333 - 11951280
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 301  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  11951333 gttactatgagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 11951280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 31346935 - 31346901
Alignment:
Q  268 ataggctacattatctcttcgttgtagcaaacgga 302  Q
    ||||||||||||||||||||||||||| |||||||    
T  31346935 ataggctacattatctcttcgttgtagaaaacgga 31346901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 5599911 - 5599971
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599911 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5599971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 5599979 - 5600042
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttttatc 311  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5599979 gttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacggagtttttatc 5600042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 5599848 - 5599905
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5599848 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 5599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 13713302 - 13713363
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13713302 tcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 5909058 - 5909116
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5909058 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 5909116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 14190483 - 14190541
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14190483 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagttt 14190541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 31663366 - 31663308
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31663366 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 31663308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 1506106 - 1506167
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  1506106 tcgttactatgagccgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 1506167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 1506173 - 1506233
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  1506173 tcgttactatgagccatacctcataggctacattatctcttcgttgtagcaaacggagttt 1506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 4852635 - 4852695
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  4852635 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 1505975 - 1506034
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  1505975 gttactatgagccgtacttcataggctacattatctcttcgttgtagcaaacggagtttt 1506034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 13713172 - 13713230
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  13713172 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 13713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 31663434 - 31663376
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  31663434 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacggagtttt 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 5599782 - 5599839
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5599782 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagttt 5599839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 5909122 - 5909175
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5909122 tcgttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaac 5909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 1506040 - 1506100
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||    
T  1506040 tcgttactatgagccttacctcataggctacattatctcttcgttgtagcaaactgagttt 1506100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 4852566 - 4852626
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  4852566 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagttttt 4852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 5578507 - 5578448
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  5578507 gttactatgagtcgtacctcgtaggctacattatctcttcgttgtagcaaacggagtttt 5578448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 13713104 - 13713163
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  13713104 gttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagtttt 13713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31663636 - 31663577
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31663636 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 31663577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 1506239 - 1506301
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||    
T  1506239 tcgttactatgagccgtacctcataggctacattatctcttcgttgttgcaaacatagttttt 1506301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 13702611 - 13702669
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||    
T  13702611 gttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacggagttt 13702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 14190549 - 14190609
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||    
T  14190549 gttactatgagccgtacctcgtaggctacattatctcttcgttgtagcaaacagagatttt 14190609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 31663486 - 31663443
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31663486 cctcataggctacattatctcttcgttgtagcaaacggagtttt 31663443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31663569 - 31663510
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  31663569 gttactttgagccgtaccttataggctacattatctcttcattgtagcaaacggagtttt 31663510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 13713369 - 13713431
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    |||||| |||||| | | ||||||||| |||||||||||||||||||||||||||||||||||    
T  13713369 tcgttattatgagtcatacctcataggatacattatctcttcgttgtagcaaacggagttttt 13713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 5578313 - 5578260
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  5578313 tcgttactataagtcgtacctcataggctacattatctcttcgttgtagcaaac 5578260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 13713239 - 13713296
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  13713239 ttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaacagagttt 13713296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 5578377 - 5578322
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag 303  Q
    ||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||    
T  5578377 gttactatgagccatacctcattggctacattatctcttcgttgtagcaaaaggag 5578322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 6735439 - 6735379
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| |||  |||||| |||||||||||||||||||||||||||| ||| ||||    
T  6735439 gttactatgagtcgtatctcataagctacattatctcttcgttgtagcaaacagagatttt 6735379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 31663297 - 31663238
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||  || |||||||||||||||||||| ||| |||||||||||||| |||||    
T  31663297 ttactatgagttgtacctcataggctacattatctattcattgtagcaaacggatttttt 31663238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 5578246 - 5578182
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacat--tatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||| | |||||||| ||||||  |||||||||||||||| |||||||| ||||    
T  5578246 tcgttactatgagccatacctcatagactacattatatctcttcgttgtagtaaacggagatttt 5578182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 299
Target Start/End: Original strand, 4852721 - 4852756
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4852721 cctcataggctacattatctcttcggtgtagcaaac 4852756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 6735371 - 6735314
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| ||||||| ||||||||||||||||   ||||||||| ||||||||    
T  6735371 gttactatgagtcgtacctcataagctacattatctcttc---gtagcaaacagagttttt 6735314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 18652126 - 18652195
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18652126 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaag 18652195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 18676184 - 18676253
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18676184 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18676253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 18686224 - 18686293
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18686224 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaag 18686293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 18720714 - 18720783
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18720714 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18720783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 496
Target Start/End: Original strand, 18728150 - 18728219
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 496  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18728150 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18728219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 18111575 - 18111633
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18111575 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 18111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 28034793 - 28034851
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28034793 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 14521098 - 14521046
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14521098 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 14521046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 5835618 - 5835677
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5835618 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 5835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 5938854 - 5938913
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  5938854 gttactatgagccgtacctcataggctacatcatctcttcgttgtagcaaacggagtttt 5938913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 5938921 - 5938980
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5938921 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggaatttt 5938980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 18111440 - 18111499
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18111440 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacggggtttt 18111499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 5938989 - 5939047
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5938989 ttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacggagtttt 5939047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 14521162 - 14521104
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  14521162 gttactatgagccgtacctcatacgctacattatctcttcgttgtagcaaacggagttt 14521104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 19384201 - 19384262
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  19384201 tcgttactatgagccgtacctcataggttacattatctcttcgtcgtagcaaacggagtttt 19384262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 5938787 - 5938846
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||    
T  5938787 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacggagtttt 5938846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 18111507 - 18111566
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  18111507 gttattatgagcggtacctcataggctacattatctcttcgttgtagcaaacggagtttt 18111566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 28034657 - 28034710
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  28034657 tcgttactatgagccgtacctcataggctacattatttcttcgttgtagcaaac 28034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 29897111 - 29897168
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtt 305  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  29897111 gttactatgagccgtacctcataggctacattatctctttgttgtagcaaacagagtt 29897168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 19384087 - 19384147
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||    
T  19384087 tcgttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaatggagttt 19384147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 29897056 - 29897108
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 300  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  29897056 gttactatgagccgtacctcataggctacattatttcttcgttgtagcaaacg 29897108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 5938720 - 5938779
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  5938720 gttactatgagtcgtacctcatagtctacattatctcttcgttgtagcaaactgagtttt 5938779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 19441052 - 19441111
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  19441052 gttactatgagtcgtacctcatagactacattatctcttcgtcgtagcaaacggagtttt 19441111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 19441119 - 19441170
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19441119 gttactacgagccgtacctcataggctacattatctcttcgttgtagcaaac 19441170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 28034726 - 28034785
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||    
T  28034726 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaacagagtttt 28034785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 2746838 - 2746780
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||    
T  2746838 ttactatgagccgtacctcataggctttattatctcttcgttgtagcaaacggattttt 2746780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 19480043 - 19479989
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  19480043 gttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacgga 19479989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 19384330 - 19384375
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttg 291  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19384330 tcgttactatgagccgtacctcataggctacattatctcttcgttg 19384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 45227351 - 45227290
Alignment:
Q  249 ttactatgagc-cgttcctcataggctacattatctcttcgttgtagcaaacggagttttta 309  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||    
T  45227351 ttactatgagcacgtaccacataggctacattatctcttcgttgtagcaaacagagttttta 45227290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 19384282 - 19384324
Alignment:
Q  265 ctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  19384282 ctcataggctacattatctcttcgtcgtagcaaacggagtttt 19384324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 308
Target Start/End: Original strand, 29897166 - 29897226
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    |||||||||| |||| |||||||  ||| ||||||||||||||||||||||| ||||||||    
T  29897166 gttactatgaaccgtacctcataaactatattatctcttcgttgtagcaaacagagttttt 29897226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 19384148 - 19384195
Alignment:
Q  259 ccgttcctcataggctacattatctcttcgttgtagcaaacggagttt 306  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||||    
T  19384148 ccgtacctcataggttacattatctcttcgtcgtagcaaacggagttt 19384195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 19480110 - 19480050
Alignment:
Q  249 ttactatgagc-cgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||| ||||  |||||||    
T  19480110 ttactatgagcacgtacctcataggctacattatctcttcattgtaggaaacaaagttttt 19480050  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 45227283 - 45227234
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 298  Q
    ||||||| || ||| |||||| ||||||||||||||||| ||||||||||    
T  45227283 ttactataagtcgtacctcatgggctacattatctcttcattgtagcaaa 45227234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 19480161 - 19480125
Alignment:
Q  264 cctcataggctacattatctcttcgttgtagcaaacg 300  Q
    ||||| || ||||||||||||||||||||||||||||    
T  19480161 cctcaaagactacattatctcttcgttgtagcaaacg 19480125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 11078 - 11005
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  11078 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 11005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 427 - 500
Target Start/End: Original strand, 10265 - 10338
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  10265 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 10338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 500
Target Start/End: Original strand, 1305 - 1378
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    ||||| ||||||||| | ||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||    
T  1305 tctgtgtctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtaataatgaagtatt 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 22207896 - 22207955
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  22207896 gttactatgagccgtacctcataggttacattatctcttcgttgtagcaaacggagtttt 22207955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 51844412 - 51844469
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag 303  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  51844412 tcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacggag 51844469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 14114814 - 14114754
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  14114814 gttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacggagttttt 14114754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 22208030 - 22208082
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22208030 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 22208082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 15088567 - 15088626
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  15088567 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagttttt 15088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 22207692 - 22207751
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  22207692 ttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacgaagttttt 22207751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 22207760 - 22207819
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22207760 gttactataagtcgtacctcataggctacattatctcttcgttgtagcaaacggagtttt 22207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 22207828 - 22207887
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||    
T  22207828 ttactatgagccgtaactcataggctacattatctcttcgttgtagcaaacgaagttttt 22207887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 22211175 - 22211234
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  22211175 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacggagttttt 22211234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 22208098 - 22208148
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22208098 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 22208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 22207964 - 22208023
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| || |||||    
T  22207964 ttactatgagccgtacctcataggctacattatctcttggttgtagcaaacagaattttt 22208023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 51844347 - 51844402
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggag 303  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  51844347 gttactatgagtcgtacctcataggctacattatctcttcgctgtagcaaacggag 51844402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 15088633 - 15088687
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  15088633 gttactatgagccgtacctcatagactacattatctcttcattgtagcaaacgga 15088687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 22207625 - 22207683
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||    
T  22207625 ttactatgagccgtacctcatatgctacattatctcttcgttgtaacaaacggaatttt 22207683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 22211241 - 22211295
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgga 302  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  22211241 gttactatgagccgtacctcatagactacattatctcttcattgtagcaaacgga 22211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 14114745 - 14114685
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||| ||||    
T  14114745 gttactatgagtcgtacctcataggttacattatctcttcattgtagcaaacggagatttt 14114685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 14114883 - 14114823
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||| ||| |||| || |||||||||||||||||||||||||||| ||||||||    
T  14114883 gttactatgagtcgtacctcgtaagctacattatctcttcgttgtagcaaacagagttttt 14114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 14114954 - 14114894
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||| || |||||    
T  14114954 gttactatgagccgcacctcgtaggctacattatctcttcgttgtagcaaacagaattttt 14114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 51844479 - 51844533
Alignment:
Q  246 tcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 300  Q
    |||||| |||||| ||| |||||||||||||||||||||||| || || ||||||    
T  51844479 tcgttattatgagtcgtacctcataggctacattatctcttcattataacaaacg 51844533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 26139607 - 26139534
Alignment:
Q  427 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 500  Q
    |||||||||| || ||| || ||||| ||||| | ||||||||| ||||| | ||||||||| |||||||||||    
T  26139607 tctgtctctggaattcctacatccacaaatctatccttttttagtggagggagaaattgtgataatgaagtatt 26139534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 90477 - 90528
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  90477 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 90528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 90544 - 90601
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtt 305  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||||    
T  90544 gttactatgagccgtacctcataggcaaaattatctcttcgttgtagcaaacagagtt 90601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 90613 - 90663
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||||    
T  90613 gttactatgagccgtac-tcataggctacattatctattcgttgtagcaaac 90663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 40053 - 40001
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacg 300  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40053 gttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacg 40001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 39985 - 39935
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  39985 ttactatgagtcatacctcataggctacattatctcttcgttgtagcaaac 39935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 69755 - 69695
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagttttt 308  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||    
T  69755 gttactatgagccgtacctcataggctacattatctcttcattgtagcaaacagatttttt 69695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 69889 - 69830
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    ||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||    
T  69889 gttactatgagtcgtgcatcataggctatattatctcttcgttgtagcaaacggagtttt 69830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 69822 - 69771
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  69822 gttactatgagttgtacctcataggctacattatctcttcgttgtagcaaac 69771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 3626 - 3677
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 299  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3626 gttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 3677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 3560 - 3618
Alignment:
Q  249 ttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacggagtttt 307  Q
    |||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||    
T  3560 ttactatgagccttacctcataggctacattatctcttcgttgtaataaacggagtttt 3618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 3693 - 3737
Alignment:
Q  248 gttactatgagccgttcctcataggctacattatctcttcgttgt 292  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  3693 gttactatgagccgtacctcataggctacattatctcttcgttgt 3737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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