View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2502_low_10 (Length: 281)

Name: NF2502_low_10
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2502_low_10
NF2502_low_10
[»] chr3 (4 HSPs)
chr3 (34-181)||(49839901-49840048)
chr3 (34-83)||(16705117-16705166)
chr3 (37-165)||(3793818-3793946)
chr3 (240-269)||(49839794-49839823)
[»] chr2 (4 HSPs)
chr2 (34-165)||(38610217-38610348)
chr2 (34-175)||(23886503-23886644)
chr2 (34-165)||(38615342-38615473)
chr2 (109-170)||(24137050-24137111)
[»] chr1 (7 HSPs)
chr1 (34-165)||(49209281-49209412)
chr1 (29-173)||(51392672-51392816)
chr1 (34-83)||(14547150-14547199)
chr1 (26-83)||(19862483-19862540)
chr1 (109-170)||(19862385-19862446)
chr1 (20-82)||(19832491-19832554)
chr1 (108-163)||(19832615-19832670)
[»] chr4 (9 HSPs)
chr4 (34-165)||(53962258-53962389)
chr4 (34-181)||(33993477-33993625)
chr4 (48-175)||(50117357-50117480)
chr4 (34-83)||(14195333-14195382)
chr4 (118-165)||(43388794-43388841)
chr4 (34-80)||(43391657-43391703)
chr4 (108-165)||(14195417-14195473)
chr4 (34-83)||(43388701-43388750)
chr4 (109-165)||(43391562-43391618)
[»] chr7 (1 HSPs)
chr7 (37-167)||(46148913-46149043)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 49840048 - 49839901
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctca 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  49840048 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagattaacccaatggattagatctgctccacctca 49839949  T
Q  134 tcaagagagcacatgcacctccccacactcaacccaagcatatcaacc 181  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  49839948 tcaagagagcacatgcacctctccacactcaacccaaacatatcaacc 49839901  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 16705117 - 16705166
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggag 83  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  16705117 ggtgaagtctaacatgagggagccaataggtccctcatgacatgagggag 16705166  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 3793818 - 3793946
Alignment:
Q  37 gaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctcatca 136  Q
    ||||||||| |||||||||   |||||||||||||    |||||||||  ||||||| ||||||||  |   |||||||| |||||  || || ||| ||    
T  3793818 gaagtctaagatgaggtagctgataggtccctcattgtgtgagggagttttttttaacggtgagatcaatgcaatggattggatctattcaacttcagca 3793917  T
Q  137 agagagcacatgcacctccccacactcaa 165  Q
    |||||||||||||||||| ||||||||||    
T  3793918 agagagcacatgcacctctccacactcaa 3793946  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 49839823 - 49839794
Alignment:
Q  240 acaacccatggcttcactccgcccccttca 269  Q
    ||||||||||||||||||||||||||||||    
T  49839823 acaacccatggcttcactccgcccccttca 49839794  T

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Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 38610217 - 38610348
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctca 133  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  38610217 ggtgaagtctaacatgagggagccaataggtccctcatgtcatgagggagtgctttttaatggtgagattgacccaatggattggatctgctccacctca 38610316  T
Q  134 tcaagagagcacatgcacctccccacactcaa 165  Q
     |||||||||||||||||||| ||||||||||    
T  38610317 gcaagagagcacatgcacctctccacactcaa 38610348  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 23886644 - 23886503
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctca 133  Q
    |||||||||||| ||| |||||   |||||||||||||   |||||| | |  ||||||| ||||||||  |   |||||||| || ||| |||||||||    
T  23886644 ggtgaagtctaagatggggtagctgataggtccctcattgtatgaggaacttttttttaacggtgagatcaatgcaatggattggacctgttccacctca 23886545  T
Q  134 tcaagagagcacatgcacctccccacactcaacccaagcata 175  Q
     |||||||||||||||||||| ||||||||||||||| ||||    
T  23886544 gcaagagagcacatgcacctctccacactcaacccaaacata 23886503  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 38615473 - 38615342
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatgg--tgagatttacctaatggattagatctgctccacct 131  Q
    ||||||| |||  |||||| ||| ||||| ||||||||| |||||||||||  ||||||| ||  || |||| |  ||||||||| ||||||||||||||    
T  38615473 ggtgaaggctaggatgagggagtcaatagctccctcatgtcatgagggagtt-tttttaacggaatg-gattaaggtaatggattggatctgctccacct 38615376  T
Q  132 catcaagagagcacatgcacctccccacactcaa 165  Q
    || |||||||||||||||||||| ||| ||||||    
T  38615375 cagcaagagagcacatgcacctctccatactcaa 38615342  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 24137050 - 24137111
Alignment:
Q  109 aatggattagatctgctccacctcatcaagagagcacatgcacctccccacactcaacccaa 170  Q
    |||||||  ||||| |||||||||| ||||||||||| | ||||||  ||||||||||||||    
T  24137050 aatggataggatctactccacctcagcaagagagcacctacacctcttcacactcaacccaa 24137111  T

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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 49209412 - 49209281
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctca 133  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  49209412 ggtgaagtctaacatgagggagccaataggtccctcatgtcatgagggagtgctttttaatggtgagattgacccaatggattagatctgctccacctca 49209313  T
Q  134 tcaagagagcacatgcacctccccacactcaa 165  Q
     |||||||||||||| ||||| ||||||||||    
T  49209312 gcaagagagcacatgtacctctccacactcaa 49209281  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 51392816 - 51392672
Alignment:
Q  29 tatacggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctcca 128  Q
    ||||||| ||||||||| |||||||||||||||||||||||||   ||||||||||  ||||||| ||||||||  |   |||||||| |||||| ||||    
T  51392816 tatacggcgaagtctaaaatgaggtagtgaataggtccctcattgtatgagggagttttttttaacggtgagatcaatgcaatggattggatctgttcca 51392717  T
Q  129 cctcatcaagagagcacatgcacctccccacactcaacccaagca 173  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||    
T  51392716 cctcagcaagagagcacatgcacctctccacactcaaccaaagca 51392672  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 14547150 - 14547199
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggag 83  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  14547150 ggtgaggtctaacatgagggagtgaataggtccctcatgacatgagggag 14547199  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 19862540 - 19862483
Alignment:
Q  26 gtatatacggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggag 83  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||    
T  19862540 gtatatacggtgaagtctaacatgagggagccaataggtccctcatgatatgagggag 19862483  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 19862446 - 19862385
Alignment:
Q  109 aatggattagatctgctccacctcatcaagagagcacatgcacctccccacactcaacccaa 170  Q
    |||||||| ||||| |||||||| | ||||||||||| | |||||| |||||||||||||||    
T  19862446 aatggattggatctactccacctaagcaagagagcacctacacctctccacactcaacccaa 19862385  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 19832491 - 19832554
Alignment:
Q  20 atatgggtatatac-ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgaggga 82  Q
    ||||| |||||||| |||| |||||||||||||| ||  || ||||||||||||||||||||||    
T  19832491 atatgtgtatatacaggtgcagtctaacatgagggagccaacaggtccctcatgacatgaggga 19832554  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 19832615 - 19832670
Alignment:
Q  108 taatggattagatctgctccacctcatcaagagagcacatgcacctccccacactc 163  Q
    ||||||||| ||||| |||||||||| ||||||||||| | |||||| ||||||||    
T  19832615 taatggattggatctactccacctcagcaagagagcacctacacctctccacactc 19832670  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 53962258 - 53962389
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctca 133  Q
    ||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||    
T  53962258 ggtgaagtctaacatgagggagccaataggtccctcatgtcatgagggagtgctttttaatggtgagattgatccaatggattagatctgctccatctca 53962357  T
Q  134 tcaagagagcacatgcacctccccacactcaa 165  Q
     |||||||||||||| ||||| ||||||||||    
T  53962358 gcaagagagcacatgtacctctccacactcaa 53962389  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 33993477 - 33993625
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgc--tttttaatggtgagatttacctaatggattagatctgctccacct 131  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||| |||||||| ||| ||| |||| |||| |||||||||    
T  33993477 ggtgaagtctaacatgaggtagtgaatagg-ccttcatgacatgagggagtgcgctttttaatagtgagattgacccaatagattggatccgctccacct 33993575  T
Q  132 catcaagagagcacatgcacctccccacactcaacccaagcatatcaacc 181  Q
    ||||||||||||||||||||||| |||||||||| ||||  |||||||||    
T  33993576 catcaagagagcacatgcacctctccacactcaatccaaatatatcaacc 33993625  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 50117480 - 50117357
Alignment:
Q  48 tgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctcatcaagagagcacat 147  Q
    ||||||||||  ||||||||||||    |||||||||  ||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||    
T  50117480 tgaggtagtgtttaggtccctcat----tgagggagttttttttaatggtgagattgacccaattgattggatctgctccacctcatcaagagagcacat 50117385  T
Q  148 gcacctccccacactcaacccaagcata 175  Q
    ||||||| | ||||||||||||| ||||    
T  50117384 gcacctctctacactcaacccaaacata 50117357  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 14195333 - 14195382
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggag 83  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||||||    
T  14195333 ggtgaagtctaacatgagggagccaataggtccctcatgacatgagggag 14195382  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 43388794 - 43388841
Alignment:
Q  118 gatctgctccacctcatcaagagagcacatgcacctccccacactcaa 165  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  43388794 gatctactccacctcagcaagagagcacatgcacctctccacactcaa 43388841  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 43391703 - 43391657
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagg 80  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  43391703 ggtgaagtctaacatgagggagtcaataggtccctcatgtcatgagg 43391657  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 14195417 - 14195473
Alignment:
Q  108 taatggattagatctgctccacctcatcaagagagcacatgcacctccccacactcaa 165  Q
    ||||||||| ||||| |||||||||| ||||||||||||| |||||| ||||||||||    
T  14195417 taatggatt-gatctactccacctcagcaagagagcacatacacctctccacactcaa 14195473  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 43388701 - 43388750
Alignment:
Q  34 ggtgaagtctaacatgaggtagtgaataggtccctcatgacatgagggag 83  Q
    ||||||||||||||||||| ||  |||||||||||||||||||| |||||    
T  43388701 ggtgaagtctaacatgagggagccaataggtccctcatgacatgtgggag 43388750  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 43391618 - 43391562
Alignment:
Q  109 aatggattagatctgctccacctcatcaagagagcacatgcacctccccacactcaa 165  Q
    |||||||| |||||||||||||||| ||||||| |||||| || || ||||||||||    
T  43391618 aatggattggatctgctccacctcaacaagagaacacatgtacttctccacactcaa 43391562  T

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Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 46148913 - 46149043
Alignment:
Q  37 gaagtctaacatgaggtagtgaataggtccctcatgacatgagggagtgctttttaatggtgagatttacctaatggattagatctgctccacctcatca 136  Q
    ||||||||| |||||||||||||||||||||||||   ||||||||||  ||||||||||||||||| ||| ||| |||| |||||||||||||||||||    
T  46148913 gaagtctaagatgaggtagtgaataggtccctcattgaatgagggagttttttttaatggtgagattgacccaatagattggatctgctccacctcatca 46149012  T
Q  137 agagagcacatgcacctccccacactcaacc 167  Q
    |||||||||||||||||| ||||||||||||    
T  46149013 agagagcacatgcacctctccacactcaacc 46149043  T

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