View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2502_low_15 (Length: 232)

Name: NF2502_low_15
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2502_low_15
NF2502_low_15
[»] chr5 (2 HSPs)
chr5 (1-98)||(22127869-22127966)
chr5 (1-34)||(20850619-20850652)
[»] chr6 (3 HSPs)
chr6 (1-98)||(18740080-18740177)
chr6 (1-94)||(18741317-18741410)
chr6 (1-98)||(22459551-22459649)
[»] chr1 (3 HSPs)
chr1 (1-98)||(21345830-21345927)
chr1 (25-98)||(39198904-39198977)
chr1 (25-77)||(47399585-47399637)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-98)||(14520-14617)
[»] chr2 (5 HSPs)
chr2 (2-98)||(15498301-15498398)
chr2 (1-98)||(32135399-32135496)
chr2 (153-213)||(15464540-15464600)
chr2 (1-34)||(22025539-22025572)
chr2 (11-65)||(12397411-12397465)
[»] scaffold0597 (1 HSPs)
scaffold0597 (1-98)||(7180-7277)
[»] scaffold0996 (1 HSPs)
scaffold0996 (1-98)||(3403-3500)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 22127966 - 22127869
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22127966 gatccccctaatgttcaaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatctaccttctgcttattcaa 22127869  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20850652 - 20850619
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  20850652 gatccccctaatgttccaaaaaataatcttcatt 20850619  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 18740080 - 18740177
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  18740080 gatccccctaatgttccaaaaaataatcttcatttagaggttggaagaggaccctgtgaacgggttttggtttgaaaatctaccttctgcttattcaa 18740177  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 18741317 - 18741410
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttat 94  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  18741317 gatcctcctaatgttccaaaaaataatcttcatttagaggttggaagaggaccctgtgaacgggttttggtttgaaagtctaccttctgcttat 18741410  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 22459649 - 22459551
Alignment:
Q  1 gatccccctaatgttccaaaaaa-taatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    |||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||    
T  22459649 gatcccccaaatgttccaaaaaaataatcttcatttagatgttggaagaggaccctatgaacgggttttggtttgaaaatctaccttctccttattcaa 22459551  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21345830 - 21345927
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21345830 gatcctcctaatgttcaaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatctaccttctgcttattcaa 21345927  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 39198977 - 39198904
Alignment:
Q  25 aatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  39198977 aatcttcatttagaggttggaagaggaccctgtgaacgggttttggtttgaaaatctaccttctgcttattcaa 39198904  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 47399585 - 47399637
Alignment:
Q  25 aatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaa 77  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  47399585 aatcttcatttagaggttggaagaggaccctgtgaacgggttttggtttgaaa 47399637  T

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Target: scaffold0221 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 14520 - 14617
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||    
T  14520 gatcctcctaatgttccaaaaaataatcttcatttagaggttggaagaggaccctgtgaacgggttttggtttaaaaatctaccttctacttattcaa 14617  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 15498398 - 15498301
Alignment:
Q  2 atccccctaatgttccaaaaaa-taatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  15498398 atcccccaaatgttccaaaaaaataatcttcatttagaggttggaagaggaccctgtgaacgggttttggtttgaaaatctaccttctgcttattcaa 15498301  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 32135399 - 32135496
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    |||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||| ||||| ||||||||||||| ||||||||||||||||||    
T  32135399 gatccccctaatgttccaaaaaataatcttcattgagagtttgggagaggaccctgtgaccgggttttggtttgaaaatctaccttctgcttattcaa 32135496  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 15464540 - 15464600
Alignment:
Q  153 aatatataagaaaagggactgaaatgtttttgcagtttccaactgtcacaaataatacgag 213  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  15464540 aatatataagaaaagggactgaaatgttttagtagtttccaactgtcacaaataatacgag 15464600  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22025539 - 22025572
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22025539 gatccccctaatgttccaaaaaataatcttcatt 22025572  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 12397411 - 12397465
Alignment:
Q  11 atgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggt 65  Q
    |||||||||||||| || |||||||| ||| |||| |||||||||| ||||||||    
T  12397411 atgttccaaaaaattatattcatttaaagggtgaacgaggaccctgagaacgggt 12397465  T

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Target: scaffold0597 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7180 - 7277
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    |||||| ||||||||||||||||||||||||||| ||||||||  |||||||| |||||| |||| ||||||||||||| ||||||||||||||||||    
T  7180 gatcccactaatgttccaaaaaataatcttcattaagaggttggcagaggaccgtgtgaatgggttttggtttgaaaatctaccttctgcttattcaa 7277  T

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Target: scaffold0996 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3500 - 3403
Alignment:
Q  1 gatccccctaatgttccaaaaaataatcttcatttagaggttgaaagaggaccctgtgaacgggtcttggtttgaaaatttaccttctgcttattcaa 98  Q
    |||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||| ||||| || ||||||||||||||| | |||||||||||    
T  3500 gatccccctaatgttccaaaaaataatcttcattgagatggtggaagaggaccctgtgagcgggttttagtttgaaaatttaccgtttgcttattcaa 3403  T

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