View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2502_low_2 (Length: 507)

Name: NF2502_low_2
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2502_low_2
NF2502_low_2
[»] chr5 (13 HSPs)
chr5 (18-489)||(38447109-38447575)
chr5 (326-480)||(26033204-26033358)
chr5 (361-480)||(38180913-38181032)
chr5 (361-480)||(38190099-38190218)
chr5 (361-480)||(38208137-38208256)
chr5 (361-480)||(38217324-38217443)
chr5 (361-480)||(38456273-38456392)
chr5 (45-167)||(26033464-26033586)
chr5 (45-167)||(38180670-38180792)
chr5 (45-167)||(38190339-38190461)
chr5 (45-167)||(38207894-38208016)
chr5 (45-167)||(38217564-38217686)
chr5 (45-167)||(38456030-38456152)
[»] chr1 (4 HSPs)
chr1 (335-472)||(38342704-38342844)
chr1 (335-472)||(38446897-38447037)
chr1 (18-203)||(38342406-38342593)
chr1 (18-203)||(38446599-38446786)
[»] chr6 (1 HSPs)
chr6 (335-450)||(4121599-4121714)
[»] chr4 (1 HSPs)
chr4 (353-480)||(53351322-53351446)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Original strand, 38447109 - 38447575
Alignment:
Q  18 gaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447109 gaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaa 38447208  T
Q  118 aataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgaggtatttttgttcatgttttactttcnnnnnnncaatt 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |     
T  38447209 aataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcgaggtatttttgttcatgttttactttcttttttt--ttc 38447306  T
Q  218 gattgaaactataacaacatagtcacatacatatataggaggttatttggattttttacatgcactctagtctgaaaaatctagctttacataatttggt 317  Q
     |||||| ||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38447307 aattgaacctataacaacatagtcacatac----ataggaggttatttggattttttacatacactctagtctgaaaaatctagctttacataatttggt 38447402  T
Q  318 a-nnnnnnnatcatgtcattaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagag 416  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447403 atttttttgatcatgtcattaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagag 38447502  T
Q  417 aaaatataaaaagcgtggcttgtcacccttccctggcaacatggaactggatgatgagttgaatggtggttcc 489  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38447503 aaaacataaaaagtgtggcttgtcacccttccctgacaacatggaactggatgatgagttgaatggtggttcc 38447575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 326 - 480
Target Start/End: Complemental strand, 26033358 - 26033204
Alignment:
Q  326 atcatgtcattaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataa 425  Q
    ||||||||||||||||| ||||||| |||||||| ||||| || ||||||| ||||||||||||||||||||||||||| |||||||| ||||||  | |    
T  26033358 atcatgtcattaatttgtattcgttctttttgtgtcagttaccgggaagaagcgataatgacatcaagaacttttggaacgcgagaaaaagaaaacttga 26033259  T
Q  426 aaagcgtggcttgtcacccttccctggcaacatggaactggatgatgagttgaat 480  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  26033258 aaggcgtggcttgtcacccttccctgacaacatggaactggatgatgagctgaat 26033204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 38180913 - 38181032
Alignment:
Q  361 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacatgg 460  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||  | ||||||  ||||||||||||||||| | ||||||||    
T  38180913 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg 38181012  T
Q  461 aactggatgatgagttgaat 480  Q
    ||| |||| || ||||||||    
T  38181013 aaccggatcataagttgaat 38181032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 361 - 480
Target Start/End: Complemental strand, 38190218 - 38190099
Alignment:
Q  361 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacatgg 460  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||  | ||||||  ||||||||||||||||| | ||||||||    
T  38190218 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg 38190119  T
Q  461 aactggatgatgagttgaat 480  Q
    ||| |||| || ||||||||    
T  38190118 aaccggatcataagttgaat 38190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 38208137 - 38208256
Alignment:
Q  361 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacatgg 460  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||  | ||||||  ||||||||||||||||| | ||||||||    
T  38208137 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg 38208236  T
Q  461 aactggatgatgagttgaat 480  Q
    ||| |||| || ||||||||    
T  38208237 aaccggatcataagttgaat 38208256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 361 - 480
Target Start/End: Complemental strand, 38217443 - 38217324
Alignment:
Q  361 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacatgg 460  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||  | ||||||  ||||||||||||||||| | ||||||||    
T  38217443 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg 38217344  T
Q  461 aactggatgatgagttgaat 480  Q
    ||| |||| || ||||||||    
T  38217343 aaccggatcataagttgaat 38217324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 361 - 480
Target Start/End: Original strand, 38456273 - 38456392
Alignment:
Q  361 cagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctggcaacatgg 460  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||||||  | ||||||  ||||||||||||||||| | ||||||||    
T  38456273 cagttaccgggaagaagcgataatgacatcaagaacttttggaatgcgagaaaaagaaaacttgaaaagctcggcttgtcacccttccccgacaacatgg 38456372  T
Q  461 aactggatgatgagttgaat 480  Q
    ||| |||| || ||||||||    
T  38456373 aaccggatcataagttgaat 38456392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 26033586 - 26033464
Alignment:
Q  45 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 144  Q
    |||||| ||| | |||||||||||| ||||   ||| | ||| |||||||||||||||||| ||||||||||||  ||||| |||  |||   ||| |||    
T  26033586 aagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaag 26033487  T
Q  145 tatggtggattcaaatggtctaa 167  Q
    ||||||| |||||||||||||||    
T  26033486 tatggtgaattcaaatggtctaa 26033464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 38180670 - 38180792
Alignment:
Q  45 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 144  Q
    |||||| ||| | |||||||||||| |||||  ||| | ||| |||||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||    
T  38180670 aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag 38180769  T
Q  145 tatggtggattcaaatggtctaa 167  Q
    ||||||| |||||||||||||||    
T  38180770 tatggtgaattcaaatggtctaa 38180792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 38190461 - 38190339
Alignment:
Q  45 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 144  Q
    |||||| ||| | |||||||||||| |||||  ||| | ||| |||||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||    
T  38190461 aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag 38190362  T
Q  145 tatggtggattcaaatggtctaa 167  Q
    ||||||| |||||||||||||||    
T  38190361 tatggtgaattcaaatggtctaa 38190339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 38207894 - 38208016
Alignment:
Q  45 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 144  Q
    |||||| ||| | |||||||||||| |||||  ||| | ||| |||||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||    
T  38207894 aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag 38207993  T
Q  145 tatggtggattcaaatggtctaa 167  Q
    ||||||| |||||||||||||||    
T  38207994 tatggtgaattcaaatggtctaa 38208016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 38217686 - 38217564
Alignment:
Q  45 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 144  Q
    |||||| ||| | |||||||||||| |||||  ||| | ||| |||||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||    
T  38217686 aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag 38217587  T
Q  145 tatggtggattcaaatggtctaa 167  Q
    ||||||| |||||||||||||||    
T  38217586 tatggtgaattcaaatggtctaa 38217564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 38456030 - 38456152
Alignment:
Q  45 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 144  Q
    |||||| ||| | |||||||||||| |||||  ||| | ||| |||||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||    
T  38456030 aagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaag 38456129  T
Q  145 tatggtggattcaaatggtctaa 167  Q
    ||||||| |||||||||||||||    
T  38456130 tatggtgaattcaaatggtctaa 38456152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 38342704 - 38342844
Alignment:
Q  335 ttaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtgg 434  Q
    |||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||| || |||  | | |    
T  38342704 ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattg 38342803  T
Q  435 cttgtcacccttccctggcaac---atggaactggatgatg 472  Q
    ||||||||||||||||| ||||   |||||||||| |||||    
T  38342804 cttgtcacccttccctgacaacaacatggaactggttgatg 38342844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 38446897 - 38447037
Alignment:
Q  335 ttaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtgg 434  Q
    |||||||| |||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||| || |||  | | |    
T  38446897 ttaatttgtattcattctttttgtgacagatgcctggaagaaccgataatgacatcaagaacttttggaacgcaagaaaaagaaaacatcaaagacattg 38446996  T
Q  435 cttgtcacccttccctggcaac---atggaactggatgatg 472  Q
    ||||||||||||||||| ||||   |||||||||| |||||    
T  38446997 cttgtcacccttccctgacaacaacatggaactggttgatg 38447037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 38342406 - 38342593
Alignment:
Q  18 gaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaa 117  Q
    |||||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||| |||||| | ||| ||||||||||||||| ||||||||||||    
T  38342406 gaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaa 38342505  T
Q  118 aataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttttgttcatgttttactt 203  Q
     | ||| ||||| |||||  |   |||| |||||  |||||||||||||| || |||| |||||  |||||||||||||| |||||||    
T  38342506 gaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttactt 38342593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 38446599 - 38446786
Alignment:
Q  18 gaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaa 117  Q
    |||||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||| |||||| | ||| ||||||||||||||| ||||||||||||    
T  38446599 gaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaagaa 38446698  T
Q  118 aataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttttgttcatgttttactt 203  Q
     | ||| ||||| |||||  |   |||| |||||  |||||||||||||| || |||| |||||  |||||||||||||| |||||||    
T  38446699 gaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttttgttcatgctttactt 38446786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 335 - 450
Target Start/End: Original strand, 4121599 - 4121714
Alignment:
Q  335 ttaatttgcattcgttatttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtgg 434  Q
    |||||||||||||||| | |||||||||||| ||||||||| | |||||||  |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  4121599 ttaatttgcattcgttctctttgtgacagtttcctggaagatcagataatgctatcaagaacttttggaatgcaagaaaaagaaaatataaaaagagtgg 4121698  T
Q  435 cttgtcacccttccct 450  Q
    | | ||||||| ||||    
T  4121699 cctatcaccctaccct 4121714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 353 - 480
Target Start/End: Complemental strand, 53351446 - 53351322
Alignment:
Q  353 ttttgtgacagttgcctggaagaaccgataatgacatcaagaacttttggaatgcgagaaagagaaaatataaaaagcgtggcttgtcacccttccctgg 452  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||  | ||||||||    |||||||||| ||||     
T  53351446 ttttgtgatagttgcctggaagaagcgataatgacatcaagaatttttggaatgcaagaaaaagaaaacttgaaaagcgt---atgtcaccctttcctga 53351350  T
Q  453 caacatggaactggatgatgagttgaat 480  Q
    ||| ||||||||| ||||||||||||||    
T  53351349 caagatggaactgaatgatgagttgaat 53351322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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