View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2502_low_5 (Length: 346)
Name: NF2502_low_5
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2502_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 15076361 - 15076234
Alignment:
| Q |
34 |
catacaaaatatttaagtgcgatttttcataatattaaggatcacaatgtagctcaacacaacatttgactaagatttttcatcaaatcaaggtaactga |
133 |
Q |
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| T |
15076361 |
catacaaaatatttaagtgcgatttttcataatattaaggatcacaatgtagctcaacacaa-atttgactaagatttttcatcaaatcaaggtaactga |
15076263 |
T |
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| Q |
134 |
ccacaatattcaggaagaaaacttgcaag |
162 |
Q |
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| T |
15076262 |
ccacaatattcaggaagaaaacttgcaag |
15076234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 15071016 - 15070921
Alignment:
| Q |
235 |
ggttacaaaatgacaagacacatattaagttgagagattctagcttaatttgtccatgcatgcataacacctatgcttcaaagtctcactaattta |
330 |
Q |
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| T |
15071016 |
ggttacaaaatgacaagacacatattaagttgagagattctagcttaatttgtccatgcatgcataacacctatgcttcaaagtctcactaattta |
15070921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 15064266 - 15064199
Alignment:
| Q |
263 |
gttgagagattctagcttaatttgtccatgcatgcataacacctatgcttcaaagtctcactaattta |
330 |
Q |
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| T |
15064266 |
gttgagagattctagcttaatttgtccatgcatgcattacacctatgcttcaaagtctcactaattta |
15064199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 15064508 - 15064408
Alignment:
| Q |
62 |
ataatattaaggatcacaatgtagctcaacacaacatttgactaagatttttcatcaaatcaaggtaactgaccacaatattcaggaagaaaacttgcaa |
161 |
Q |
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| T |
15064508 |
ataatatcaaggatcacaatgttggtgaacacaacatttgaccaagatattttatcaaatcaaggtaactgaacagaatattcatgagtaaaactagcaa |
15064409 |
T |
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| Q |
162 |
g |
162 |
Q |
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| T |
15064408 |
g |
15064408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 30854165 - 30854278
Alignment:
| Q |
51 |
tgcgatttttcataatattaaggatcacaatgtagctcaacacaacatttgactaaga--tttttcatcaaatcaaggtaactgaccacaatattcagga |
148 |
Q |
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| T |
30854165 |
tgcgattttttataatatgaaggatcacaatgtagctgaactcaacatttgactgagattttttttatcaaatcaaggtaattgaacaaaatattaagga |
30854264 |
T |
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| Q |
149 |
agaaaacttgcaag |
162 |
Q |
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| T |
30854265 |
ggaaaacttgcaag |
30854278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 30854421 - 30854479
Alignment:
| Q |
269 |
agattctagcttaatttgtccatgcatgcataacacctatgcttcaaagtctcactaat |
327 |
Q |
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| T |
30854421 |
agattccagcttaatttgtccatgcatgcatgacacctatgcttcaaagtctcactaat |
30854479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 30878618 - 30878675
Alignment:
| Q |
267 |
agagattctagcttaatttgtccatgcatgcataacacctatgcttcaaagtctcact |
324 |
Q |
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| T |
30878618 |
agagattctagcttaatttgtccatgcatgcatgacacctatgcttcaaagtttcact |
30878675 |
T |
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