View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2502_low_8 (Length: 320)
Name: NF2502_low_8
Description: NF2502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2502_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 11731990 - 11731700
Alignment:
| Q |
20 |
ctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11731990 |
ctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaa |
11731891 |
T |
|
| Q |
120 |
gatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11731890 |
gatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
11731791 |
T |
|
| Q |
220 |
ataaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactttttctccctttg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11731790 |
ataaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactttttctccctttg |
11731700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 11902212 - 11902479
Alignment:
| Q |
20 |
ctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaa |
119 |
Q |
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||||| |||||||||| |||| |||||||||||| ||||| || ||||| |||||||||||||||||||||| ||| | | |||||||||||||||||| |
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| T |
11902212 |
ctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtagggacttgaaggtgttgaa |
11902311 |
T |
|
| Q |
120 |
gatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
219 |
Q |
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| T |
11902312 |
gatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtg---ctgtacggcaaaagaatggttctcagtttctttgct |
11902408 |
T |
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| Q |
220 |
ata---aacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattcc |
287 |
Q |
| |
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|| |||| | | ||||| |||||||| || ||||||||| |||||||||| |||||||||| |||||| |
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| T |
11902409 |
ttatcgaacaacaagtctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattcc |
11902479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 11828210 - 11827945
Alignment:
| Q |
20 |
ctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgtt |
116 |
Q |
| |
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||||| |||||||||| |||| |||||||||||| |||| || |||||||||||||||||||||||||||||||| | | || ||||||||||| |
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| T |
11828210 |
ctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtc |
11828111 |
T |
|
| Q |
117 |
gaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttcttt |
216 |
Q |
| |
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||||||||||||||| |||| ||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||||| | ||||||||| ||||||||| |
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| T |
11828110 |
gaagatcttatcacaagttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatg---ttgtatggcaaaagaatggtccttagtttcttt |
11828014 |
T |
|
| Q |
217 |
gctat---aaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagc |
282 |
Q |
| |
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||| | ||||| |||||| || ||| |||| |||||||| ||| |||||| |||||| |||||||| |
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| T |
11828013 |
gctgtctgaaacaccgaatcagggatctcacatgaaagatctaaagcaaaattgaacgaaactcgcagc |
11827945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 11860345 - 11860070
Alignment:
| Q |
20 |
ctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgtt |
116 |
Q |
| |
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||||| |||||||||| |||| |||||||||||| | || || ||||||||||||| |||||||||||||||||| | | || ||||||||||| |
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| T |
11860345 |
ctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtc |
11860246 |
T |
|
| Q |
117 |
gaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttcttt |
216 |
Q |
| |
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||||||||||||||| |||| || |||| ||| ||||||| ||||||||||||||||||||| ||||||||||| | || |||||| ||||||||| |
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| T |
11860245 |
gaagatcttatcacaagttgatgttgtcacctttacctcgtacggaagccgagggttgttaatg---ttgtatggcaaaagaaaggtccttagtttcttt |
11860149 |
T |
|
| Q |
217 |
gctat---aaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttctt |
292 |
Q |
| |
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||| | ||||| | |||| || ||| |||| |||||||| ||| ||||||| |||||| ||||||||||||| |||| |
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| T |
11860148 |
gctttctgaaacaccaaatcagggatctcacatgaaagatctaaagcaaaatcgaacgaaactcgcagcattccatctt |
11860070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 12039110 - 12038843
Alignment:
| Q |
20 |
ctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatggacttgaaggtgttgaa |
119 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||| | || | ||||||||||||||||||| | ||| |||||| |||| | ||||||||||| || |
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| T |
12039110 |
ctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcatagctttgaaggtgttaaa |
12039011 |
T |
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| Q |
120 |
gatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
219 |
Q |
| |
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||||||||||||||||| || ||||||| ||||||| |||||||||||||||| | || ||||||||||| | ||||||||||||||| || ||| |
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| T |
12039010 |
gatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtg---ttgtatggcaaaagaatggtcctcagttttttagct |
12038914 |
T |
|
| Q |
220 |
at---aaacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattcc |
287 |
Q |
| |
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| ||||| ||||||| ||||||||| | | ||| ||| || ||||||||||| |||| |||||||| |
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| T |
12038913 |
ttctcaaacacacaatctgggatcccacacaacaaatctaaagcataatcaaacgaaactcgtagcattcc |
12038843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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