View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2503_high_11 (Length: 240)
Name: NF2503_high_11
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 38273676 - 38273898
Alignment:
| Q |
19 |
gatcttacttctcaatttata-tcttgtaacataatttcnnnnnnnatctctaaaacggaagagaattttatctcctccatattaacttgtgtgcacctt |
117 |
Q |
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| T |
38273676 |
gatcttacttctcaatttataatcttgtaacataatttctttttttatctctaaaatggaagagaattttatctcctccatattaacttgtgtgcacctt |
38273775 |
T |
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| Q |
118 |
tcaaatttcattttacctccttttggattttaaaatatttagaaaatcacttcattttggtcctctataatcaaagataatttcttttcccatcctctta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38273776 |
tcaaatttcattttacctccttttggattttaaaatatttagaaaatcacttcattttggtcctctataatcaaagataatttcttttcccatcctctta |
38273875 |
T |
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| Q |
218 |
acatccggcatgccttccaaatt |
240 |
Q |
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| T |
38273876 |
acatccggcatgccttccaaatt |
38273898 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 26574139 - 26574173
Alignment:
| Q |
160 |
aaaatcacttcattttggtcctctataatcaaaga |
194 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26574139 |
aaaatcacttcattttggtcctctataatcaaaga |
26574173 |
T |
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