View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2503_high_2 (Length: 516)
Name: NF2503_high_2
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 10247062 - 10246692
Alignment:
| Q |
19 |
gagactgtgaattagatgattgacttgagaagcttctaccttcaaacatgtgttcagtactatgttgatgttcaggagcatgatagggaagaccataata |
118 |
Q |
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| T |
10247062 |
gagactgtgaatcagatgattgacttgagaagcttgtaccttcaaacatgtgttcagtactatgttgacgttcaggagcatgatagggaagaccata--- |
10246966 |
T |
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| Q |
119 |
ttgtggcatgttgttccaattagggtttggatgattgaattgataaacattaggatcataaggatatcctatagtataaaatggtccttgaggaatgaaa |
218 |
Q |
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| T |
10246965 |
ttgtggcatgttgttccaattagggtttggatgattgaattgataaacattaggatcataaggatatcctatagtataaaatggtccttgaggaatgaaa |
10246866 |
T |
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| Q |
219 |
tgatgattgttatatccatttccttgattctcaatatgaaaaacataactactccattcaagtgtaacatgtttttctgccttccttagctttgataaca |
318 |
Q |
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| T |
10246865 |
tgatgattgttatatccatttccttgattctcaatatgaaaaacataactactccattcaagtgtaacatgtttttctgccttccttagcttcgataaca |
10246766 |
T |
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| Q |
319 |
atttttgtggatcagctttacctttcacataagcaaatccagcgggtggatttatattgtaagacaaatctacc |
392 |
Q |
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| T |
10246765 |
atttttgtggatcaactttacctttcaaataagcgaatccagcgggttgatttatattgtaagacaaatctacc |
10246692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 454 - 503
Target Start/End: Complemental strand, 10246630 - 10246581
Alignment:
| Q |
454 |
atgagtacacatacctttaaagcttttcaaaactttagacatggaatttg |
503 |
Q |
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| T |
10246630 |
atgagtacacatacctttaaagcttttcaaaactttagacatggaatttg |
10246581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 10237499 - 10237542
Alignment:
| Q |
119 |
ttgtggcatgttgttccaattagggtttggatgattgaattgat |
162 |
Q |
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| T |
10237499 |
ttgtggcatgttgtgccaattagggttaggatgattgaattgat |
10237542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 370
Target Start/End: Original strand, 10237727 - 10237831
Alignment:
| Q |
266 |
actactccattcaagtgtaacatgtttttctgccttccttagctttgataacaatttttgt-ggatcagctttacctttcacataagcaaatccagcggg |
364 |
Q |
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| T |
10237727 |
actaatccattcgagtgtagcatgttgtcctcccttctttagcagtaataa-aatttttatcggatcggctttacctttcacataagcaactccagcaga |
10237825 |
T |
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| Q |
365 |
tggatt |
370 |
Q |
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|||||| |
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| T |
10237826 |
tggatt |
10237831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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