View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2503_high_3 (Length: 444)
Name: NF2503_high_3
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 45153390 - 45152977
Alignment:
| Q |
14 |
gaaaacaaaagtgggaagggtgagaagggagtggaatagttgtagcaaagaaccttaaatacaagaaaataaatgttgaatgtaggttgagcaaatagca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45153390 |
gaaaacaaaagtgggaagggtgagaagggagtggaatagttgtagcaaagaaccttaaatacaagaaaataaatgttgaatgtaggttgagcaaatagca |
45153291 |
T |
|
| Q |
114 |
atagtactatttgctagagtgatgaggaatttgagtctttcatgttgagattgaaattaaagtgagttgtattggaaatctcaaacataacactctcgtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45153290 |
atagtactatttgctagagtgatgaggaatttgagtctttcatgttgagattgaaattaaagtgagttgtattggaaatctcaaacataacactctcgtg |
45153191 |
T |
|
| Q |
214 |
ttgaatatcagcatgagatcataatcaaattcaatgcaaatagaaaattcaagtaacaagttttaaaacatttggtctacatattaggaggtgtggctga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45153190 |
ttgaatatcagcatgagatcataatcaaatccaatgcaaatagaaaattcaagtaacaagttttaaaacatttggtctacatattaggaggtgtggctga |
45153091 |
T |
|
| Q |
314 |
agaaagtattacaaaccatagataagccgcaatcaagaaccaaattataaccactgatgtaaatagcttcatcagaatcaagaaacaaagctgcttatgc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45153090 |
agaaagtattacaaaccatagataagccacaatcaagaaccaaattataaccactgatgtaaatagcttcatcagaatcaagaaacaaagctgcttatgc |
45152991 |
T |
|
| Q |
414 |
aatatgcctagact |
427 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45152990 |
aatatgcctagact |
45152977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 45145443 - 45145368
Alignment:
| Q |
345 |
atcaagaaccaaattataaccactgatgtaaatagcttcatcagaatcaagaaacaaagctgcttatgcaatatgc |
420 |
Q |
| |
|
||||| |||||| |||| ||||||||| |||| ||||||||||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
45145443 |
atcaacaaccaagttatgaccactgatataaacagcttcatcagaagcaagaaacaaagctgcttctgcaacatgc |
45145368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 12700702 - 12700770
Alignment:
| Q |
352 |
accaaattataaccactgatgtaaatagcttcatcagaatcaagaaacaaagctgcttatgcaatatgc |
420 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12700702 |
accaaattatgaccactaatgtaaacagcttcatcagaagcaagaaacaaagctgcttctgcaatatgc |
12700770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University