View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2503_high_8 (Length: 282)
Name: NF2503_high_8
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_high_8 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 15593990 - 15594252
Alignment:
| Q |
1 |
ctagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
15593990 |
ctagccagtcttgactacaaggttttcgaacatgctctcgagctccttcaaattaccctcaagaacatctacttcattatgctggttattcttcttatca |
15594089 |
T |
|
| Q |
101 |
agcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15594090 |
agcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact |
15594189 |
T |
|
| Q |
201 |
tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15594190 |
tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag |
15594252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 4679758 - 4679507
Alignment:
| Q |
7 |
agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa |
106 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| | ||||||||||| | ||||||||||||||| ||| || ||| | || |||||||||||||| |
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|
| T |
4679758 |
agtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttcttt---ctgttcgttattcttatcaagcaag |
4679662 |
T |
|
| Q |
107 |
tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa |
206 |
Q |
| |
|
|| | ||||||||||||||| | || |||||| | ||| | | ||||||| ||||| || |||||||| ||||| | |||||| | | ||||||| |
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|
| T |
4679661 |
ttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaa |
4679562 |
T |
|
| Q |
207 |
cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttc |
261 |
Q |
| |
|
|||| || |||||| ||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
4679561 |
cacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttc |
4679507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 29464835 - 29464875
Alignment:
| Q |
30 |
acatgctctcgagctccttcagattaccctcaagaacatct |
70 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
29464835 |
acatgctctccagctcctccagatgaccctcaagaacatct |
29464875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 8586911 - 8586660
Alignment:
| Q |
9 |
tcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatt |
108 |
Q |
| |
|
||||||| | ||||| ||| ||||||||||| ||||||||||||| | || |||||||||||| ||||| | ||||| |||||| |||||||||||| |
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|
| T |
8586911 |
tcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattctt---atcaagcaaatt |
8586815 |
T |
|
| Q |
109 |
tgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaaca |
208 |
Q |
| |
|
|| ||||| |||||||||| ||| |||||| |||||| || ||||||| |||| ||| | |||||||||||| |||||||| || |||||||||||| |
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|
| T |
8586814 |
tgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaacttgtaaaca |
8586715 |
T |
|
| Q |
209 |
cagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag |
263 |
Q |
| |
|
|| |||||||||| ||||||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
8586714 |
caatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcag |
8586660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 8615676 - 8615929
Alignment:
| Q |
7 |
agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa |
106 |
Q |
| |
|
|||||| | |||||||| ||| ||||| || | |||||||||||||| | | || ||||| ||||||||| | ||||||| |||| | |||||||||| |
|
|
| T |
8615676 |
agtcttaaatacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaacttctacttcactctgctggttattcct---atcaagcaaa |
8615772 |
T |
|
| Q |
107 |
tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa |
206 |
Q |
| |
|
|||| |||||| ||||||||| || || ||| ||||| || ||| || || ||||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8615773 |
tttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaa |
8615872 |
T |
|
| Q |
207 |
cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag |
263 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
8615873 |
tgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcag |
8615929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 3146363 - 3146476
Alignment:
| Q |
145 |
ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt |
244 |
Q |
| |
|
||||| ||| ||||| |||| || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| | ||||||||| |
|
|
| T |
3146363 |
ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt |
3146462 |
T |
|
| Q |
245 |
aggaatttctcatc |
258 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
3146463 |
agaaatttttcatc |
3146476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 262
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
| Q |
145 |
ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt |
244 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| |||| ||||| || ||| ||| |||| || | |||||| |||||||||| | ||||||||| |
|
|
| T |
8645976 |
ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt |
8646075 |
T |
|
| Q |
245 |
aggaatttctcatcttca |
262 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8646076 |
aggaatttctcatcttca |
8646093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
| Q |
151 |
agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat |
250 |
Q |
| |
|
||||||||| |||| ||| | |||||||||||| |||||||| ||| |||||||| || | |||||| ||||||||| | ||||||||||||||| |
|
|
| T |
8640764 |
agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat |
8640665 |
T |
|
| Q |
251 |
ttctcatcttca |
262 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
8640664 |
ttctcagcttca |
8640653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 13334382 - 13334321
Alignment:
| Q |
200 |
ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttc |
261 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
13334382 |
ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttc |
13334321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 8658323 - 8658388
Alignment:
| Q |
6 |
cagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta |
71 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| | || ||||||||||||| | |||||| |||||||| |
|
|
| T |
8658323 |
cagtattgactacaagcttttccaacatgatttccagctccttcagatgatcctcaacaacatcta |
8658388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 16663208 - 16662949
Alignment:
| Q |
1 |
ctagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatca |
100 |
Q |
| |
|
|||| ||||||||| |||||||| || ||||| ||||| ||||||||||||| | |||||||||||||||||||||| ||||| |||||| || | |
|
|
| T |
16663208 |
ctagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggt---tcttctcatga |
16663112 |
T |
|
| Q |
101 |
agcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact |
200 |
Q |
| |
|
||||||| | |||||| ||||||||| ||| |||||| || || || |||| || ||||||||||||| ||||||||| |||||||| ||||| | |
|
|
| T |
16663111 |
agcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaatt |
16663012 |
T |
|
| Q |
201 |
tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag |
263 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16663011 |
tgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcag |
16662949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 30774289 - 30774466
Alignment:
| Q |
86 |
tgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttca |
185 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| | |
|
|
| T |
30774289 |
tgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatcttta |
30774388 |
T |
|
| Q |
186 |
gagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag |
263 |
Q |
| |
|
|| |||| ||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
30774389 |
gaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcag |
30774466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
| Q |
151 |
agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat |
250 |
Q |
| |
|
|||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| | || ||||| || ||| |
|
|
| T |
43743918 |
agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat |
43744017 |
T |
|
| Q |
251 |
ttctcatctt |
260 |
Q |
| |
|
|||||||||| |
|
|
| T |
43744018 |
ttctcatctt |
43744027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
| Q |
147 |
ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta |
245 |
Q |
| |
|
||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| | |||||||| | |
|
|
| T |
43445783 |
ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa |
43445882 |
T |
|
| Q |
246 |
ggaatttctcat |
257 |
Q |
| |
|
| |||||||||| |
|
|
| T |
43445883 |
gaaatttctcat |
43445894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
| Q |
172 |
atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt |
260 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || | ||||||||||| ||||| ||||||| |
|
|
| T |
28219041 |
atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt |
28219129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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