View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2503_low_11 (Length: 316)
Name: NF2503_low_11
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 302
Target Start/End: Original strand, 5291984 - 5292263
Alignment:
| Q |
21 |
atcgggttttattcacaaaaattgtccattgaaagttacgatccgattgatggagtaatttgagatgannnnnnnnngttgtta-agggaggctcttgaa |
119 |
Q |
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| T |
5291984 |
atcgggttttattcacaaaaattgtccattgaaaattacgatccgattggtggagtaatttgagatgattttttt---ttgttagagggaggctcctgaa |
5292080 |
T |
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| Q |
120 |
gcacaatgagaggaactatgaattaatagttccggactttgctagtacatctgtacaaacactcccttagcgaaacgtgtggcaaaaatatatgatacaa |
219 |
Q |
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||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5292081 |
gcacaatgagaggaactatgaattactagttgccgactttgctagtacatctgtacaaacactcccttagcgaaacgtgtggcgaaaatatatgatacaa |
5292180 |
T |
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| Q |
220 |
tctttgtataggaaatctctaataatctctggctcattagcatgatgatgaaatgaaactaagacgtttccttagtgacaagt |
302 |
Q |
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| T |
5292181 |
tctttgtacatgaaatctctaataatctctggctcattagcatgatgatgaaatgaaactaagacgttttcttagtgacaagt |
5292263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 50076811 - 50076770
Alignment:
| Q |
231 |
gaaatctctaataatctctggctcattagcatgatgatgaaa |
272 |
Q |
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| T |
50076811 |
gaaatctctaataatctctagctcattagcataatgatgaaa |
50076770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 47748361 - 47748477
Alignment:
| Q |
155 |
actttgctagtacatctgtacaaacactcccttagcgaaacgtgtggcaaaaatatatgatacaatctttgtataggaaatctctaataatctctggctc |
254 |
Q |
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| T |
47748361 |
actttgctagcacatctgcacaagcattcccttcgcgaaaagtgtgatgaagagatatcgttcaatcttttttcatgaaatctctaataatctctagctc |
47748460 |
T |
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| Q |
255 |
attagcatgatgatgaa |
271 |
Q |
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||| |||| |||||||| |
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| T |
47748461 |
attcgcataatgatgaa |
47748477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 34540963 - 34540899
Alignment:
| Q |
209 |
atatgatacaatctttgtataggaaatctctaataatctctggctcattagcatgatgatgaaat |
273 |
Q |
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| T |
34540963 |
atatgacacaatatttctgtatgaaatctctaataatctctaactcattagcatggtgatgaaat |
34540899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 41405966 - 41405925
Alignment:
| Q |
231 |
gaaatctctaataatctctggctcattagcatgatgatgaaa |
272 |
Q |
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| T |
41405966 |
gaaatctctaataatctcgggctcattagcataatgttgaaa |
41405925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 10795443 - 10795403
Alignment:
| Q |
231 |
gaaatctctaataatctctggctcattagcatgatgatgaa |
271 |
Q |
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| T |
10795443 |
gaaatctcttataatctctagctcattagcataatgatgaa |
10795403 |
T |
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