View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2503_low_12 (Length: 282)

Name: NF2503_low_12
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2503_low_12
NF2503_low_12
[»] chr1 (3 HSPs)
chr1 (1-263)||(15593990-15594252)
chr1 (7-261)||(4679507-4679758)
chr1 (30-70)||(29464835-29464875)
[»] chr7 (7 HSPs)
chr7 (9-263)||(8586660-8586911)
chr7 (7-263)||(8615676-8615929)
chr7 (145-258)||(3146363-3146476)
chr7 (145-262)||(8645976-8646093)
chr7 (151-262)||(8640653-8640764)
chr7 (200-261)||(13334321-13334382)
chr7 (6-71)||(8658323-8658388)
[»] chr2 (1 HSPs)
chr2 (1-263)||(16662949-16663208)
[»] chr4 (1 HSPs)
chr4 (86-263)||(30774289-30774466)
[»] chr8 (2 HSPs)
chr8 (151-260)||(43743918-43744027)
chr8 (147-257)||(43445783-43445894)
[»] chr5 (1 HSPs)
chr5 (172-260)||(28219041-28219129)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 15593990 - 15594252
Alignment:
Q  1 ctagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatca 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15593990 ctagccagtcttgactacaaggttttcgaacatgctctcgagctccttcaaattaccctcaagaacatctacttcattatgctggttattcttcttatca 15594089  T
Q  101 agcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact 200  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594090 agcaaatttgtagccactgtaattgcaccattgatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact 15594189  T
Q  201 tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594190 tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag 15594252  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 4679758 - 4679507
Alignment:
Q  7 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 106  Q
    |||||||||| |||| ||||| ||||||||||| | ||||||||||| | ||||||||||||||| ||| ||   ||| |  || ||||||||||||||     
T  4679758 agtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttcttt---ctgttcgttattcttatcaagcaag 4679662  T
Q  107 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 206  Q
    || |  ||||||||||||||| | || ||||||  |  ||| | | ||||||| ||||| || |||||||| ||||| | ||||||  | |  |||||||    
T  4679661 ttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaa 4679562  T
Q  207 cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttc 261  Q
    ||||    || |||||| |||||||||  ||||||||||  ||||||| ||||||    
T  4679561 cacaaaattccaatgcactcattaccttagccttccttaaaaatttcttatcttc 4679507  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 29464835 - 29464875
Alignment:
Q  30 acatgctctcgagctccttcagattaccctcaagaacatct 70  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  29464835 acatgctctccagctcctccagatgaccctcaagaacatct 29464875  T

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Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 8586911 - 8586660
Alignment:
Q  9 tcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatt 108  Q
    ||||||| | ||||| ||| ||||||||||| ||||||||||||| | || ||||||||||||  ||||| | ||||| ||||||   ||||||||||||    
T  8586911 tcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattctt---atcaagcaaatt 8586815  T
Q  109 tgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaaca 208  Q
    || ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| |||||||| || ||||||||||||    
T  8586814 tgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaacttgtaaaca 8586715  T
Q  209 cagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag 263  Q
    || |||||||||| |||||||||||  ||||||||||||||||||| ||| ||||    
T  8586714 caatcatctaatgaattcattaccttagccttccttaggaatttctgatcctcag 8586660  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 8615676 - 8615929
Alignment:
Q  7 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 106  Q
    |||||| | |||||||| ||| ||||| || | |||||||||||||| | | || ||||| ||||||||| | ||||||| |||| |   ||||||||||    
T  8615676 agtcttaaatacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaacttctacttcactctgctggttattcct---atcaagcaaa 8615772  T
Q  107 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 206  Q
    |||| |||||| |||||||||   || || |||  ||||| || ||| || || |||||    |||||||||||||| |||||||| |||||||||||||    
T  8615773 tttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaa 8615872  T
Q  207 cacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag 263  Q
      |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||    
T  8615873 tgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcag 8615929  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 258
Target Start/End: Original strand, 3146363 - 3146476
Alignment:
Q  145 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 244  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | |||||||||||||||||| |  |||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttcctt 3146462  T
Q  245 aggaatttctcatc 258  Q
    || ||||| |||||    
T  3146463 agaaatttttcatc 3146476  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 262
Target Start/End: Original strand, 8645976 - 8646093
Alignment:
Q  145 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttcctt 244  Q
    ||||||||| ||||| |||||||| ||||||||  |||| ||||| ||  ||| ||| ||||  || |  |||||| |||||||||| |  |||||||||    
T  8645976 ttctttagatgagagatttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttcctt 8646075  T
Q  245 aggaatttctcatcttca 262  Q
    ||||||||||||||||||    
T  8646076 aggaatttctcatcttca 8646093  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 8640764 - 8640653
Alignment:
Q  151 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 250  Q
    ||||||||| |||| ||| | |||||||||||| ||||||||  ||| ||||||||  || |  |||||| |||||||||  |  |||||||||||||||    
T  8640764 agaagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaat 8640665  T
Q  251 ttctcatcttca 262  Q
    |||||| |||||    
T  8640664 ttctcagcttca 8640653  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 13334382 - 13334321
Alignment:
Q  200 ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttc 261  Q
    |||||||||||   ||||||||||||||||||||  |||||||||| |||||||| ||||||    
T  13334382 ttgtaaacacaagaatctaatgcattcattaccttggccttccttaagaatttcttatcttc 13334321  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 8658323 - 8658388
Alignment:
Q  6 cagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta 71  Q
    |||| ||||||||||| ||||| |||||| | || ||||||||||||| | |||||| ||||||||    
T  8658323 cagtattgactacaagcttttccaacatgatttccagctccttcagatgatcctcaacaacatcta 8658388  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 16663208 - 16662949
Alignment:
Q  1 ctagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatca 100  Q
    |||| ||||||||| ||||||||  || ||||| ||||| ||||||||||||| | ||||||||||||||||||||||   |||||   |||||| || |    
T  16663208 ctagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggt---tcttctcatga 16663112  T
Q  101 agcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaact 200  Q
    ||||||| |  |||||| |||||||||  ||| |||||| ||  || ||   |||| || ||||||||||||| ||||||||| |||||||| ||||| |    
T  16663111 agcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaatt 16663012  T
Q  201 tgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag 263  Q
    ||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  16663011 tgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcag 16662949  T

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Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 30774289 - 30774466
Alignment:
Q  86 tgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttca 185  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| |    
T  30774289 tgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatcttta 30774388  T
Q  186 gagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcag 263  Q
    || |||| |||||||||||||  |||  |||||||||||||||||||   | ||||||||||||||||||||||||||    
T  30774389 gaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcatcttcag 30774466  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 43743918 - 43744027
Alignment:
Q  151 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaat 250  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || |||||||||||||||||||| |  || ||||| || |||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaat 43744017  T
Q  251 ttctcatctt 260  Q
    ||||||||||    
T  43744018 ttctcatctt 43744027  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 43445783 - 43445894
Alignment:
Q  147 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa-cacagtcatctaatgcattcattacctccgccttcctta 245  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| |||||| | || |||||||||||||||||||| |  |||||||| |    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaa 43445882  T
Q  246 ggaatttctcat 257  Q
    | ||||||||||    
T  43445883 gaaatttctcat 43445894  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 28219041 - 28219129
Alignment:
Q  172 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 260  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || |  ||||||||||| ||||| |||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaatttttcatctt 28219129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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