View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2503_low_13 (Length: 245)
Name: NF2503_low_13
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 110 - 229
Target Start/End: Original strand, 12683153 - 12683272
Alignment:
| Q |
110 |
ttgtttgaactttgaaccttgttcaattcaatgcattcaacacaaagaagacccaataaagagttaaaggaaaaggaggactacattgatgttgttgggg |
209 |
Q |
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| T |
12683153 |
ttgtttgaactttgaaccttgttcaattcaatgcattcaacacaaagaagacccaataaacagttaaaggaaaaggaggactacattgatgttgttggtg |
12683252 |
T |
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| Q |
210 |
acgctgttcatgcttgttgg |
229 |
Q |
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| T |
12683253 |
acgctgttcatgcttgttgg |
12683272 |
T |
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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 12683053 - 12683125
Alignment:
| Q |
1 |
gcatttattccaattcaaactacggaaaccacaaacccttaatcaatgtaaaatttcatgaatggtgatttga |
73 |
Q |
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| T |
12683053 |
gcatttattccaattcaaactacggaaaccacaaacccttaatcaatgtaaaatttcatgaatggtgatttga |
12683125 |
T |
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