View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2503_low_17 (Length: 238)
Name: NF2503_low_17
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_low_17 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 9359355 - 9359577
Alignment:
| Q |
16 |
caaactccaccgccacgaattaacaacaatctccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9359355 |
caaactccaccgccacgaattaacaacaatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaata |
9359454 |
T |
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| Q |
116 |
gcccaaatagttgcatgccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaaacaaattcggag |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9359455 |
gcccaaatagttgcatgccaaataatccacaaccccttgcgaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaaacaaattcggag |
9359554 |
T |
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| Q |
216 |
gcgtaatgaagaagaaatcaagc |
238 |
Q |
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||||||| ||||||||||||||| |
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| T |
9359555 |
gcgtaataaagaagaaatcaagc |
9359577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 53112066 - 53112111
Alignment:
| Q |
95 |
tgattcctagcttgccaaatagcccaaatagttgcatgccaaataa |
140 |
Q |
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| T |
53112066 |
tgattcctagcttgccaaataccccaaaccgttgcatgccatataa |
53112111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 2308286 - 2308089
Alignment:
| Q |
16 |
caaactccaccgccacgaattaacaacaatctccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaata |
115 |
Q |
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| T |
2308286 |
caaactccacctccatgaatttaccacaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctcgcttgccaaata |
2308187 |
T |
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| Q |
116 |
gcccaaatagttgcatgccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaaacaaattcgg |
213 |
Q |
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| T |
2308186 |
gcccatatagttgcatgccaaatgatccacaaacctttacgaatcctcttgtttctcccttcattactccaacatgcccaatgcacaaacaaattcgg |
2308089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 32915264 - 32915401
Alignment:
| Q |
16 |
caaactccaccgccacgaattaacaacaatctccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaata |
115 |
Q |
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||||||||||||||| |||||||| ||||| |||| ||| |||||||||||||| ||||||||||| || || |||| ||||||||| |||||||||||| |
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| T |
32915264 |
caaactccaccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctcgcttgccaaata |
32915363 |
T |
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| Q |
116 |
gcccaaatagttgcatgccaaataatccacaacccttt |
153 |
Q |
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| T |
32915364 |
gcccaaatagttgcatgccaaatgatccacaaaccttt |
32915401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 24945467 - 24945328
Alignment:
| Q |
47 |
tccgacaagagatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccaca |
146 |
Q |
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|||||||| | ||||||||||| ||||||||||| ||||| || |||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
24945467 |
tccgacaataaatcatccacatatttcacctcattccggaaaatacaatgatttctagcttgccaaattgaccaaatagttgcatgccaaataatccaca |
24945368 |
T |
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| Q |
147 |
accctttgcgaatcttcttgtttctcccttcaatactcca |
186 |
Q |
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|||| || || ||| |||| ||||| |||||||||||||| |
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| T |
24945367 |
accccttacggatcctcttatttctaccttcaatactcca |
24945328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 520143 - 520310
Alignment:
| Q |
71 |
ttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctttgcgaatcttcttgtttc |
170 |
Q |
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||||||||||| ||||| || | |||||| || ||||||||||| | |||||||||||||| ||||||||||| |||||| || |||| |||||| |||| |
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| T |
520143 |
ttcacctcattccggaatataaaatgatttctcgcttgccaaattgaccaaatagttgcatcccaaataatccccaaccccttccgaaccttcttatttc |
520242 |
T |
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| Q |
171 |
tcccttcaatactccaacatgcccaatgcacaaacaaattcggaggcgtaatgaagaagaaatcaagc |
238 |
Q |
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| T |
520243 |
ctccaacattactccaactcgtccaatgaacaaacaaattcggaggagtaataaaagagaaatcaagc |
520310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 43805453 - 43805322
Alignment:
| Q |
105 |
cttgccaaatagcccaaatagttgcatgccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaaa |
204 |
Q |
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||||||| ||| || ||| ||||||||||||||||||||| || ||||| | ||| |||| |||||||||||| |||||||||| ||||||||||| | |
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| T |
43805453 |
cttgccagataccctaaagagttgcatgccaaataatccataaacctttacagatcctcttatttctcccttcactactccaacaaacccaatgcacaga |
43805354 |
T |
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| Q |
205 |
caaattcggaggcgtaatgaagaagaaatcaa |
236 |
Q |
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| T |
43805353 |
caaattcggaggagtaataaaagagaaatcaa |
43805322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 41195218 - 41195321
Alignment:
| Q |
104 |
gcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaa |
203 |
Q |
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| T |
41195218 |
gcttgccaaataacccaaatagtagcatgccaaataatccacaatcccttacgaattctcttatttctagcttcattactccaacaagcccaatgcacaa |
41195317 |
T |
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| Q |
204 |
acaa |
207 |
Q |
| |
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|||| |
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| T |
41195318 |
acaa |
41195321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 18233367 - 18233279
Alignment:
| Q |
133 |
ccaaataatccacaaccctttgcgaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaaacaaattcggaggcgtaat |
222 |
Q |
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| T |
18233367 |
ccaaatcatccacaacccctttcgaatcctcttaattctcccctcattactccaacatgccc-atgcacaaacaaatttggaggagtaat |
18233279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 51091205 - 51091040
Alignment:
| Q |
56 |
agatcatccacatgcttcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccctttgc |
155 |
Q |
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||||| ||||||| ||||| ||||| || || || || ||||||||| ||||||||| || ||||||||||||||||||| ||||| || ||| | |
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| T |
51091205 |
agatcttccacatatttcacatcattccgaaaaataatgtgattcctaacttgccaaaggaccaaaatagttgcatgccaaatcatccataaacctctat |
51091106 |
T |
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| Q |
156 |
gaatcttcttgtttctcccttcaatactccaacatgcccaatgcacaaacaaattcggaggcgtaat |
222 |
Q |
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| ||| ||||| |||| ||||| ||||||||||| |||| | ||||||||||| ||||| ||||| |
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| T |
51091105 |
ggatcctcttgattctaccttccttactccaacatttccaaag-acaaacaaattaggaggagtaat |
51091040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 5451215 - 5451287
Alignment:
| Q |
72 |
tcacctcatttcggaagatcatatgattcctagcttgccaaatagcccaaatagttgcatgccaaataatcca |
144 |
Q |
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||||||||||||||| || | |||||||||| ||||| ||||| | |||| |||| ||||||||||||||| |
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| T |
5451215 |
tcacctcatttcggacaataacatgattcctaacttgctaaataacttaaattgttgtatgccaaataatcca |
5451287 |
T |
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