View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2503_low_7 (Length: 429)
Name: NF2503_low_7
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2503_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 46861267 - 46861659
Alignment:
| Q |
18 |
aattgaaatatgttccttttaatcccatcccatccttttcttacaacacaccccacgccaattagatttcataattgaatagccttattttcctgcataa |
117 |
Q |
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| T |
46861267 |
aattgaaatatgttccttttaatcc-----catccttttcttacaacacaccccaccccaattagatttcataattgaatagccttattttcctgcataa |
46861361 |
T |
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| Q |
118 |
taagcatcacaaatgatacaaaagccagctgaagaaactttagaggacatataatcccagctggagtttgccaagttgcgatgtgacactatttgctcac |
217 |
Q |
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| T |
46861362 |
tcagcatcacaaatgatacaaaagccagctgaagaaactttagaggacatataatcccagctggagtttgccaagttgcgatgtgacactatttgctcac |
46861461 |
T |
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| Q |
218 |
aatgcaatggtccaaatcattctgcaccatggaatcagaagaaacaatatactaccaacacaaaagaatgtcttatctaatctaaattatgttgctgtac |
317 |
Q |
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| T |
46861462 |
aatgcaatggtccaaatcattctgcaccatggaatcagaagaaacaatatactaccaacacaaaagaatgtcttatctaatctaaattatgttgctgtac |
46861561 |
T |
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| Q |
318 |
ttgtaattatctttccatcttatacaagtttaagttaaattgttagtaaataatgaaagcatagcttctgcttgcataatgtatatatacatgtacttc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46861562 |
ttgtaattatctttccatcttatacaagtttaagttaaattgttagtaaataatg-aagcatagcttctgcttgcattatgtatatatacatgtacttc |
46861659 |
T |
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