View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2503_low_8 (Length: 384)

Name: NF2503_low_8
Description: NF2503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2503_low_8
NF2503_low_8
[»] chr3 (5 HSPs)
chr3 (111-382)||(17502453-17502725)
chr3 (18-110)||(51242079-51242173)
chr3 (135-228)||(17474106-17474200)
chr3 (251-282)||(17474523-17474554)
chr3 (336-382)||(17474557-17474603)
[»] chr1 (1 HSPs)
chr1 (18-110)||(2626404-2626496)
[»] chr7 (2 HSPs)
chr7 (23-85)||(17352537-17352599)
chr7 (41-85)||(22367247-22367291)
[»] chr4 (1 HSPs)
chr4 (22-80)||(33033682-33033740)
[»] chr5 (1 HSPs)
chr5 (68-110)||(41699875-41699917)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 111 - 382
Target Start/End: Original strand, 17502453 - 17502725
Alignment:
Q  111 aattgaagttaaattcattagttttgtttgcattcaacaaggtttggcataataagaacttcttttgct-atgtaaaaatgaatggttcagttccaagat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||    
T  17502453 aattgaagttaaattcattagttttgtttgcattcaacaaggtttggcataataagaacttcttttgcttatgtaaaaatgaatggttcagttccattat 17502552  T
Q  210 taattaatgctttagaatttcaattcatttaaggaaaacgtccccttgaaggaatattacatcaaactttcaagtcaacaactctttaataatttgtttt 309  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17502553 taattaatggtttagaatttcaattcatttaaggaaaacgtccccttgaaggaatattacatcaaactttcaagtcaacaactccttaataatttgtttt 17502652  T
Q  310 cagcaacattcatatgaatacggactttgatttctttacttaaaccgtatgattaaattaaaacgtagaataa 382  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17502653 cagcaacattcatatgaatagggactttgatttctttacttaaaccgtatgattaaagtaaaacgtagaataa 17502725  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 51242173 - 51242079
Alignment:
Q  18 gttgtccaatgaattttccactcttttttctccattgttgttcaatgatccttccactgttttctcttg--tttcatggattctttggtttgttc 110  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  51242173 gttgcccaatgaattttccgctcttttttctccattgttgttcaatgatccttccactgttttctcttgtttttcattgattctttggtttgttc 51242079  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 17474106 - 17474200
Alignment:
Q  135 tgtttgcattcaacaaggtttggcataataa-gaacttcttttgctatgtaaaaatgaatggttcagttccaagattaattaatgctttagaatt 228  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||||| | |||||||    
T  17474106 tgtttgcattcaacaaggtttggcatattaaagaacttcttttgctatgtaagaatgaatggtttagttccatgattaattaatggtatagaatt 17474200  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 282
Target Start/End: Original strand, 17474523 - 17474554
Alignment:
Q  251 ccccttgaaggaatattacatcaaactttcaa 282  Q
    ||||||||||||||||||||||||||||||||    
T  17474523 ccccttgaaggaatattacatcaaactttcaa 17474554  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 17474557 - 17474603
Alignment:
Q  336 ttgatttctttacttaaaccgtatgattaaattaaaacgtagaataa 382  Q
    ||||||||| |||||||| | |||||||||| |||||||||||||||    
T  17474557 ttgatttctatacttaaaacatatgattaaagtaaaacgtagaataa 17474603  T

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Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 2626404 - 2626496
Alignment:
Q  18 gttgtccaatgaattttccactcttttttctccattgttgttcaatgatccttccactgttttctcttgtttcatggattctttggtttgttc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626404 gttgcccaatgaattttccactcttttttctccattgttgttcaatgatccttccactgttttctcttgtttcatggattctttggtttgttc 2626496  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 17352537 - 17352599
Alignment:
Q  23 ccaatgaattttccactcttttttctccattgttgttcaatgatccttccactgttttctctt 85  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  17352537 ccaatgaattttccactgttttttctccattgtagttcaatgatccttccactgttttttctt 17352599  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 22367247 - 22367291
Alignment:
Q  41 ttttttctccattgttgttcaatgatccttccactgttttctctt 85  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  22367247 ttttttctccattgttgttcaatgatccttccactgttttttctt 22367291  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 33033682 - 33033740
Alignment:
Q  22 tccaatgaattttccactcttttttctccattgttgttcaatgatccttccactgtttt 80  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  33033682 tccaatgaattttccactgttttttctccattgtagttcaatgatccttccactatttt 33033740  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 41699917 - 41699875
Alignment:
Q  68 cttccactgttttctcttgtttcatggattctttggtttgttc 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  41699917 cttccactgttttatcttgtttcatggattctttggtttgttc 41699875  T

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