View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2504_high_12 (Length: 430)
Name: NF2504_high_12
Description: NF2504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2504_high_12 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 21056934 - 21056491
Alignment:
| Q |
1 |
agtagctatattcatctctatagataataacaagatgtttctcccatttacaataattacaaacaggttcaaataatttaaatagtcaattaaaggaagc |
100 |
Q |
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| T |
21056934 |
agtagctatattcatctctatagataataacaagatgtttctcccatttaaaataattacaaacaggttcaaataatttaaatagtcaattaaaggaagc |
21056835 |
T |
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| Q |
101 |
ttgagttctagaaatcaattaaagctatgtttggactctggacaacgaaactggagatcaccttttagtaatnnnnnnngaaatgatgtcgagtaaatca |
200 |
Q |
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| T |
21056834 |
ttgagttctagaaatcaattaaagctatgtctggactctggacaacgaaactggagatcaccttttagtaataaaaaaagaaacgatgtcgagtaaatca |
21056735 |
T |
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| Q |
201 |
aaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaacgcctaaatatcaagaaatgtatactgtataaaattcaggtgcat |
300 |
Q |
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| T |
21056734 |
aaatacaggtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaatgcttaaatatcaagaaatgtatactgtataaaattcaggtgcat |
21056635 |
T |
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| Q |
301 |
gttgcataatgtataaaattgtatgattcatattcaccttcgagatcttcatttttgcggctag--------------ttgtttcttcaaacaaatcctc |
386 |
Q |
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| T |
21056634 |
gttgcataatgtataaaattgtatgattcatattcaccttcgagatcttcatttttgcggctagttgtctctatcttgttgtttcttcaaacaaatcctc |
21056535 |
T |
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| Q |
387 |
tactcaaattaggcaacagtagaaccaagatcaccccttccatt |
430 |
Q |
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| T |
21056534 |
tactcaaattaggcaacagtagaaccaagatcaccccttccatt |
21056491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 26365087 - 26365483
Alignment:
| Q |
8 |
atattcatctctatagataataacaagatgtttctcccatttacaataattacaaacaggttcaaataatttaaatagtcaattaaaggaagcttgagtt |
107 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26365087 |
atattcatctctatagataataaaaagatgtttctcccttttaaaataattataaacaggttcaaatagtttaaatagtcaattaaaggaagcttgagtt |
26365186 |
T |
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| Q |
108 |
ctaga-aatcaattaaagctatgtttggactctggacaacgaaactggagatcaccttttagtaatnnnnnnngaaatgatgtcgagtaaatcaaaatac |
206 |
Q |
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| T |
26365187 |
ctagataatcaattaaagctatgtctcgact----ac----aaactttaggtcaccttttcgtaataaaaaaagaaatgacgtcaagtaaatcaaaatac |
26365278 |
T |
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| Q |
207 |
ag--gtgcaagagaagcatttttctcaagcgatttaatgtaaattaaacaacgcctaaatatcaagaaatgtatactgtataaaattcaggtgcatgttg |
304 |
Q |
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| T |
26365279 |
aggtgtgcaa-agaagcatgtttctcaaacgattcaatgtgaattaatcaacacctaaatatcaagaaatgta------ataa--------------tag |
26365357 |
T |
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| Q |
305 |
cataatgtataaaattgtatgattcatattcaccttcgagatcttcattttt--gcggctagttgtttcttcaaacaaatcctctactcaaattaggcaa |
402 |
Q |
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|||| |||||||||||||||||||| |||||||||| |||||||| ||||| | ||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
26365358 |
catattgtataaaattgtatgattc--attcaccttcaagatcttcttttttagtcagcttgttgtctcttcaaccaaatcctctactcaaattaggcaa |
26365455 |
T |
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